genome.fa.s24270.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024270.1 Corchorus olitorius cultivar O-4 contig24303, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51825

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113--166	27	2.0	27	85	0	72	18	12	24	44	1.85
2231--2280	24	2.1	24	100	0	100	38	4	30	28	1.75
2235--2288	24	2.2	24	93	0	90	40	3	31	24	1.72
2928--2988	22	3.0	19	73	15	59	24	13	13	49	1.77
2923--2983	19	3.1	19	75	13	68	24	14	14	45	1.83
2923--3016	40	2.3	40	85	5	118	24	15	12	46	1.81
6606--6645	17	2.4	16	87	4	53	45	7	12	35	1.70
8827--8912	39	2.2	39	95	0	154	33	9	24	32	1.87
8867--9011	67	2.2	67	94	0	254	36	11	24	26	1.90
9218--9346	50	2.6	50	93	0	222	36	11	27	24	1.90
12014--12074	19	3.1	19	71	13	59	22	14	14	47	1.81
19281--19334	19	2.6	21	77	19	60	38	18	3	38	1.69
22112--22399	41	6.8	41	75	12	235	41	23	11	23	1.86
22112--22348	43	5.6	43	74	10	193	41	23	10	24	1.86
22112--22406	84	3.5	83	85	3	376	41	23	10	24	1.86
32668--32702	13	2.8	12	91	8	52	85	0	14	0	0.59
32675--32699	8	3.1	8	100	0	50	88	0	12	0	0.53
35695--35768	28	2.7	27	82	2	94	18	16	25	39	1.91
35696--35767	27	2.6	28	84	2	92	19	16	25	38	1.92
36154--36194	20	2.0	20	100	0	82	9	24	19	46	1.80
38565--38604	18	2.2	18	86	8	55	32	5	10	52	1.56
40409--40640	41	5.6	40	76	11	191	41	26	9	22	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40409--40600	84	2.3	84	86	3	262	41	26	9	23	1.84
42371--42409	16	2.4	16	91	0	69	46	38	10	5	1.60
43399--43463	2	31.0	2	82	14	78	44	4	1	49	1.32
44035--44151	51	2.3	51	83	0	135	40	29	15	14	1.87
44155--44191	15	2.4	17	86	13	53	37	40	13	8	1.74
46086--46135	26	1.9	26	91	0	82	50	18	0	32	1.47
46499--46541	17	2.6	16	85	10	59	20	23	20	34	1.96
46492--46549	17	3.4	16	81	9	53	24	20	18	36	1.95
51068--51231	75	2.2	76	77	10	167	30	14	17	37	1.89

Tables:   1

The End!