Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024276.1 Corchorus olitorius cultivar O-4 contig24309, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2250
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35


Found at i:605 original size:21 final size:21

Alignment explanation


    Indices: 566--607  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        556 CTTATAATAC

                          *      
        566 TATAACATTTTTTATAACCTT
          1 TATAACATTTTTTACAACCTT

                                  
        587 TATAAC-TTTTTTAGCAACCTT
          1 TATAACATTTTTTA-CAACCTT

        608 AAAGAAGAAC


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  20    7  0.37
  21   12  0.63

ACGTcount: A:0.31, C:0.17, G:0.02, T:0.50


Consensus pattern (21 bp):   
TATAACATTTTTTACAACCTT

Found at i:996 original size:23 final size:23

Alignment explanation


    Indices: 948--997  Score: 66
    Period size: 23  Copynumber: 2.2  Consensus size: 23

        938 GTTTAATAGT

                                  *
        948 TGCA-TTTTTGCATGGCACCTTT
          1 TGCATTTTTTGCATGGCACCTTG

                            * *    
        970 TGCATTTTTTGCATGGTATCTTG
          1 TGCATTTTTTGCATGGCACCTTG

                 
        993 TGCAT
          1 TGCAT

        998 CCATCCTTTT


Statistics
Matches: 24,  Mismatches: 3, Indels: 1
        0.86            0.11        0.04

Matches are distributed among these distances:
  22    4  0.17
  23   20  0.83

ACGTcount: A:0.14, C:0.18, G:0.20, T:0.48


Consensus pattern (23 bp):   
TGCATTTTTTGCATGGCACCTTG
Done.