Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024279.1 Corchorus olitorius cultivar O-4 contig24312, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71508

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10199--10225
2
13.5
2
100
0
54
48
0
0
51
1.00
10306--10344
15
2.4
17
87
8
55
64
7
28
0
1.21
15832--15914
32
2.7
31
87
7
107
20
20
8
50
1.74
20185--20222
3
12.7
3
94
0
67
0
28
0
71
0.87
20185--20246
9
7.0
9
81
9
56
0
20
1
77
0.85
20485--20560
27
2.8
27
83
0
107
39
25
19
15
1.91
25347--25403
13
4.5
13
77
18
50
61
10
1
26
1.38
29647--29685
21
1.9
20
89
5
60
17
2
10
69
1.28
35833--35957
62
2.0
62
92
3
207
35
12
9
42
1.76
36936--37061
62
2.0
62
87
3
182
34
13
10
42
1.78
38042--38163
62
2.0
62
93
0
208
36
13
9
40
1.77
40643--40767
61
2.0
62
93
4
218
36
13
7
43
1.72
46344--47345
47
22.1
47
92
4
1560
29
17
5
48
1.68
46344--47345
499
2.0
499
96
1
1850
29
17
5
48
1.68
51224--51298
26
2.9
25
86
9
107
37
25
22
14
1.92
63163--63187
2
12.5
2
100
0
50
52
0
0
48
1.00
65668--65740
28
2.7
27
77
12
78
17
13
27
41
1.88
65838--65886
21
2.4
20
83
6
62
24
18
8
48
1.75

Tables:   1

The End!