Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024284.1 Corchorus olitorius cultivar O-4 contig24317, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3183
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31


Found at i:476 original size:25 final size:25

Alignment explanation


    Indices: 447--494  Score: 78
    Period size: 25  Copynumber: 1.9  Consensus size: 25

        437 GTATTTTGCG

                    *                
        447 TTCATGTAGCTCAAAGCTAATTTCA
          1 TTCATGTAACTCAAAGCTAATTTCA

                           *       
        472 TTCATGTAACTCAAATCTAATTT
          1 TTCATGTAACTCAAAGCTAATTT

        495 GACATTGCAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  25   21  1.00

ACGTcount: A:0.33, C:0.19, G:0.08, T:0.40


Consensus pattern (25 bp):   
TTCATGTAACTCAAAGCTAATTTCA
Done.