Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01024288.1 Corchorus olitorius cultivar O-4 contig24321, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15092
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Found at i:7526 original size:21 final size:21
Alignment explanation
Indices: 7500--7540 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7490 TTGAAGCCCT
7500 ATTGGATAC-AAGTGGTACTAA
1 ATTGGAT-CTAAGTGGTACTAA
7521 ATTGGATCTAAGTGGTACTA
1 ATTGGATCTAAGTGGTACTA
7541 GGGTTTCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.32
Consensus pattern (21 bp):
ATTGGATCTAAGTGGTACTAA
Found at i:12920 original size:154 final size:154
Alignment explanation
Indices: 12525--15092 Score: 3938
Period size: 154 Copynumber: 16.8 Consensus size: 154
12515 GCTCTTTGGT
* *
12525 CATAAACATTGGAAAGAAAAGCATTGAGGGTTGCCAAATCG-AGACTATTCAAAACGGAACTAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
* *
12589 GGGCCCCGATAGGCCCAAACTAA-AACGTGTTCCAAATGAGCTAAAAACATCACAGTGGACTAAT
66 GGGCCCCGATAGGCCCAAAATAACAA-GTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAAT
*
12653 CTCACCAAAATGAATATAGTTAGGC
130 CTCACCAAAATGATTATAGTTAGGC
* **
12678 CATAAACAATGGAAAAGAAAAGCATTGTGGGTTGCCAAATCGAAGACGATTCAAAACGTCACTAA
1 CATAAACAATGG-AAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAA
* * *
12743 TGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGTGCTAAGAACTTAACAGTGGACTAAT
65 TGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAAT
*
12808 CTCACCAAGATGATTATAGTTAGGC
130 CTCACCAAAATGATTATAGTTAGGC
* * *
12833 CATAAAGAATGGAAAGAAAAGCATTGAGGTTTTCCAAATCGAAGACGATTCAAAACGGAACTAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
* * * * * * *
12898 GTGCCCCGATATGCCCAGAATAACAAGTGTTCCAAATGAGTTAAAAACATCACAGTGGATTAAGC
66 GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
12963 TCACCAAAATGATTATAGTTAGGC
131 TCACCAAAATGATTATAGTTAGGC
* * * **
12987 CATAAACAACT-TAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACAATTCAAAACGTCACTAA
1 CATAAACAA-TGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAA
* *
13051 TGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAGTTAAAAACTTCACAGTGGACTAAT
65 TGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAAT
13116 CTCACCAAAATGATTATAGTTAGGC
130 CTCACCAAAATGATTATAGTTAGGC
* * * *
13141 CATAAACAATGGAAAGAAAA-CAATTGAGGTTTGCGAAATCGAAGACGATTTAGAACGGAACTAA
1 CATAAACAATGGAAAGAAAAGC-ATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAA
* * * * * * * *
13205 TGGGTCCCGAAAGGCCCAAATTAAAAAGAGTTCCAATTGAGTTAAAAACTTCACAGTGGACTTAT
65 TGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAAT
13270 CTCACCAAAATGATTATAGTTAGGC
130 CTCACCAAAATGATTATAGTTAGGC
*
13295 CATAAACAATGG-AAG-AAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
* * *
13358 GGGTCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCAAAAAACTTCAAAGTGGACTAATC
66 GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
*
13423 TTACCAAAATGATTATAGTTAGGC
131 TCACCAAAATGATTATAGTTAGGC
* *
13447 CATAAACATTGGAAAGAAAAGCATTGAGGGTTGCCAAATCG-AGACTATTCAAAACGGAACTAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
*
13511 GGGCCCCGATAGGCCCAAAATAAAAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
66 GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
*
13576 TCACCAAAATGATTATAATTAGGC
131 TCACCAAAATGATTATAGTTAGGC
* * * *
13600 CATAAACAATGGAAGGAAATGCATTGAGGGTTTCCAAATCGAAGACTATTCAAAACGGAACTAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
* *
13665 GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAAACTGGACTAATC
66 GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
* *
13730 TTACCAAAATGATTATAGTTAGGT
131 TCACCAAAATGATTATAGTTAGGC
* * *
13754 CATAAACATTGGAAAGAAAAGCATTGAGGGTTACCAAATCG-AGACTATTCAAAACGGAACTAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
** * * * *
13818 GGGCCCCGATAGGCCCAAAATAACAAGTACTCCAAATGAGCAAAAAACTTAAAAGTGGAATAATC
66 GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
* * *
13883 TTACCAAAAAGATTATAGTTAGGT
131 TCACCAAAATGATTATAGTTAGGC
* *
13907 CATAAACATTGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACTGAACTAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
* *
13972 GGGCCCCGATAAGCCCAAAATAAAAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
66 GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
*
14037 TCACCAAAATGATTATAATTAGGC
131 TCACCAAAATGATTATAGTTAGGC
* * * **
14061 CATAAACAATGGAAGGAAAAGCATTGAGGGTTTCCAAATCGAAGACGACTCAAAAACGTCACTAA
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTC-AAAACGGAACTAA
* *
14126 TGGGCCCCGATAGGCCCAAAATAAAAAGTGTTCCAAATGAGCT-AAAACTTCATAGTGGACTAAT
65 TGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAAT
14190 CTCACCAAAATGATTATAGTTAGGC
130 CTCACCAAAATGATTATAGTTAGGC
14215 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
**
14280 GGGCCCCGATAGGCCCAAAATAACAAGTACTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
66 GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
14345 TCACCAAAATGATTATAGTTAGGC
131 TCACCAAAATGATTATAGTTAGGC
14369 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
*
14434 GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAAAGTGGACTAATC
66 GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
*
14499 TTACCAAAATGATTATAGTTAGGC
131 TCACCAAAATGATTATAGTTAGGC
*
14523 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCG-AGACAATTCAAAACGGAACTAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
14587 GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
66 GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
14652 TCACCAAAATGATTATAGTTAGGC
131 TCACCAAAATGATTATAGTTAGGC
** *
14676 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGTCACTAGT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
* * *
14741 GGG----GATAGGCCCAAAAT-AC-AGTGTTCCAATTGA-ATTAAAACTTCACAGTGGACTAATC
66 GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
* * *
14799 TCACAAAAATGATTATTGTTTGGC
131 TCACCAAAATGATTATAGTTAGGC
* * ** *
14823 CATAAACAATGGAAAGAAAAGCATTGTGGTTTGCCAAATCGAAGACGATTCAAAACGTCACAAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
* *
14888 GGACCCCGATAGGCCAAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
66 GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
*
14953 TCACCAAAATTATTATAGTTAGGC
131 TCACCAAAATGATTATAGTTAGGC
* **
14977 CATAAACAATGGAAAGAAAAACATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGTCACTAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
* * * *
15042 AGG----GTTAGGCCCAAAATAAAAAGTGTTCCAATTGAGCT-AAAACTTCACAGT
66 GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGT
Statistics
Matches: 2222, Mismatches: 172, Indels: 46
0.91 0.07 0.02
Matches are distributed among these distances:
147 107 0.05
148 13 0.01
149 15 0.01
150 45 0.02
151 13 0.01
152 135 0.06
153 521 0.23
154 1208 0.54
155 163 0.07
156 2 0.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (154 bp):
CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
TCACCAAAATGATTATAGTTAGGC
Found at i:13726 original size:307 final size:308
Alignment explanation
Indices: 12525--15092 Score: 3945
Period size: 307 Copynumber: 8.4 Consensus size: 308
12515 GCTCTTTGGT
* *
12525 CATAAACATTGGAAAGAAAAGCATTGAGGGTTGCCAAATCG-AGACTATTCAAAACGGAACTAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
* * *
12589 GGGCCCCGATAGGCCCAAACTAAAACGTGTTCCAAATGAGCTAAAAACATCACAGTGGACTAATC
66 GGGCCCCGATAGGCCCAAAATAAAAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
* *
12654 TCACCAAAATGAATATAGTTAGGCCATAAACAATGGAAAAGAAAAGCATTGTGGGTTGCCAAATC
131 TCACCAAAATGATTATAGTTAGGCCATAAACAATGG-AAAGAAAAGCATTGAGGGTTGCCAAATC
** *
12719 GAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGTG
195 GAAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAG
* * *
12784 CTAAGAACTTAACAGTGGACTAATCTCACCAAGATGATTATAGTTAGGC
260 CTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGC
* * *
12833 CATAAAGAATGGAAAGAAAAGCATTGAGGTTTTCCAAATCGAAGACGATTCAAAACGGAACTAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
* * * * * * * *
12898 GTGCCCCGATATGCCCAGAATAACAAGTGTTCCAAATGAGTTAAAAACATCACAGTGGATTAAGC
66 GGGCCCCGATAGGCCCAAAATAAAAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
* *
12963 TCACCAAAATGATTATAGTTAGGCCATAAACAACT-TAAAGAAAAGCATTGAGGTTTGCCAAATC
131 TCACCAAAATGATTATAGTTAGGCCATAAACAA-TGGAAAGAAAAGCATTGAGGGTTGCCAAATC
* ** *
13027 GAAGACAATTCAAAACGTCACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTCCAAATGAG
195 GAAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAG
*
13092 TTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGC
260 CTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGC
* * * *
13141 CATAAACAATGGAAAGAAAA-CAATTGAGGTTTGCGAAATCGAAGACGATTTAGAACGGAACTAA
1 CATAAACAATGGAAAGAAAAGC-ATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAA
* * * * * * *
13205 TGGGTCCCGAAAGGCCCAAATTAAAAAGAGTTCCAATTGAGTTAAAAACTTCACAGTGGACTTAT
65 TGGGCCCCGATAGGCCCAAAATAAAAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAAT
*
13270 CTCACCAAAATGATTATAGTTAGGCCATAAACAATGG-AAG-AAAGCATTGAGGTTTGCCAAATC
130 CTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATC
*
13333 GAAGACGATTCAAAACGGAACTAATGGGTCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAG
195 GAAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAG
* * *
13398 CAAAAAACTTCAAAGTGGACTAATCTTACCAAAATGATTATAGTTAGGC
260 CTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGC
* *
13447 CATAAACATTGGAAAGAAAAGCATTGAGGGTTGCCAAATCG-AGACTATTCAAAACGGAACTAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
13511 GGGCCCCGATAGGCCCAAAATAAAAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
66 GGGCCCCGATAGGCCCAAAATAAAAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
* * * *
13576 TCACCAAAATGATTATAATTAGGCCATAAACAATGGAAGGAAATGCATTGAGGGTTTCCAAATCG
131 TCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCG
*
13641 AAGACTATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGC
196 AAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGC
* * * *
13706 TAAAAACTTCAAACTGGACTAATCTTACCAAAATGATTATAGTTAGGT
261 TAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGC
* * *
13754 CATAAACATTGGAAAGAAAAGCATTGAGGGTTACCAAATCG-AGACTATTCAAAACGGAACTAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
* ** * * * *
13818 GGGCCCCGATAGGCCCAAAATAACAAGTACTCCAAATGAGCAAAAAACTTAAAAGTGGAATAATC
66 GGGCCCCGATAGGCCCAAAATAAAAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
* * * *
13883 TTACCAAAAAGATTATAGTTAGGTCATAAACATTGGAAAGAAAAGCATTGAGGGTTGCCAAATCG
131 TCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCG
* * *
13948 AAGACGATTCAAAACTGAACTAATGGGCCCCGATAAGCCCAAAATAAAAAGTGTTCCAAATGAGC
196 AAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGC
*
14013 TAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAATTAGGC
261 TAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGC
* * * **
14061 CATAAACAATGGAAGGAAAAGCATTGAGGGTTTCCAAATCGAAGACGACTCAAAAACGTCACTAA
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTC-AAAACGGAACTAA
*
14126 TGGGCCCCGATAGGCCCAAAATAAAAAGTGTTCCAAATGAGCT-AAAACTTCATAGTGGACTAAT
65 TGGGCCCCGATAGGCCCAAAATAAAAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAAT
14190 CTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATC
130 CTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATC
**
14255 GAAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTACTCCAAATGAG
195 GAAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAG
14320 CTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGC
260 CTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGC
14369 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
* *
14434 GGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAAAGTGGACTAATC
66 GGGCCCCGATAGGCCCAAAATAAAAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
*
14499 TTACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCG
131 TCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCG
*
14564 -AGACAATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGC
196 AAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGC
14628 TAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGC
261 TAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGC
** *
14676 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGTCACTAGT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
* * * *
14741 GGG----GATAGGCCCAAAAT--ACAGTGTTCCAATTGA-ATTAAAACTTCACAGTGGACTAATC
66 GGGCCCCGATAGGCCCAAAATAAAAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
* * * * *
14799 TCACAAAAATGATTATTGTTTGGCCATAAACAATGGAAAGAAAAGCATTGTGGTTTGCCAAATCG
131 TCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCG
** * * *
14864 AAGACGATTCAAAACGTCACAAATGGACCCCGATAGGCCAAAAATAACAAGTGTTCCAAATGAGC
196 AAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGC
*
14929 TAAAAACTTCACAGTGGACTAATCTCACCAAAATTATTATAGTTAGGC
261 TAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGC
* **
14977 CATAAACAATGGAAAGAAAAACATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGTCACTAAT
1 CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
* * *
15042 AGG----GTTAGGCCCAAAATAAAAAGTGTTCCAATTGAGCT-AAAACTTCACAGT
66 GGGCCCCGATAGGCCCAAAATAAAAAGTGTTCCAAATGAGCTAAAAACTTCACAGT
Statistics
Matches: 2082, Mismatches: 164, Indels: 33
0.91 0.07 0.01
Matches are distributed among these distances:
300 81 0.04
301 196 0.09
303 42 0.02
304 1 0.00
305 113 0.05
306 166 0.08
307 682 0.33
308 640 0.31
309 160 0.08
310 1 0.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (308 bp):
CATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAAT
GGGCCCCGATAGGCCCAAAATAAAAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATC
TCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCG
AAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGC
TAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGC
Done.