Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024290.1 Corchorus olitorius cultivar O-4 contig24323, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14905
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.32


Found at i:4939 original size:19 final size:19

Alignment explanation


    Indices: 4888--4939  Score: 54
    Period size: 19  Copynumber: 2.8  Consensus size: 19

       4878 ATGTGGTGTT

                               
       4888 TTTAATAA-TAATTATTCA
          1 TTTAATAATTAATTATTCA

            * *               * 
       4906 ATAACATAATT-ATTATTTA
          1 TTTA-ATAATTAATTATTCA

                           
       4925 TTTAATAATTAATTA
          1 TTTAATAATTAATTA

       4940 ATTTCAGCCC


Statistics
Matches: 26,  Mismatches: 5, Indels: 5
        0.72            0.14        0.14

Matches are distributed among these distances:
  18    8  0.31
  19   17  0.65
  20    1  0.04

ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50


Consensus pattern (19 bp):   
TTTAATAATTAATTATTCA

Found at i:5317 original size:13 final size:13

Alignment explanation


    Indices: 5299--5324  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       5289 AAGGTAACAA

                         
       5299 CAAAAATCATCAC
          1 CAAAAATCATCAC

                         
       5312 CAAAAATCATCAC
          1 CAAAAATCATCAC

       5325 TCATGCCAAG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.54, C:0.31, G:0.00, T:0.15


Consensus pattern (13 bp):   
CAAAAATCATCAC
Done.