Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024294.1 Corchorus olitorius cultivar O-4 contig24327, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33496

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
798--840
21
2.1
21
86
4
61
32
18
20
27
1.96
15488--15546
3
19.0
3
86
6
82
61
0
0
38
0.96
21060--21119
28
2.1
29
87
3
86
13
11
30
45
1.79
21069--21127
29
2.1
29
87
3
84
11
11
33
42
1.78
22321--22405
23
3.7
23
68
25
63
55
21
5
17
1.63
22311--22400
46
2.0
46
97
0
171
53
18
6
21
1.67
22505--22537
5
6.6
5
96
0
57
0
54
0
45
0.99
24703--24737
17
2.1
17
94
0
61
51
17
20
11
1.75
26255--26285
15
2.1
15
93
0
53
58
0
29
12
1.35
27218--27246
2
14.5
2
100
0
58
48
0
0
51
1.00
28274--28342
29
2.3
29
82
4
77
11
10
34
43
1.75
32691--32771
39
2.0
40
90
2
128
50
7
3
38
1.48
32701--32761
17
3.2
18
68
20
52
50
9
3
36
1.52

Tables:   1

The End!