Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024296.1 Corchorus olitorius cultivar O-4 contig24329, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7812
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32


Found at i:4490 original size:15 final size:15

Alignment explanation


    Indices: 4472--4503  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       4462 TTGTTTTTAA

                     *     
       4472 GTTTAATTGTTTTCT
          1 GTTTAATTGCTTTCT

                           
       4487 GTTTAATTGCTTTCT
          1 GTTTAATTGCTTTCT

              
       4502 GT
          1 GT

       4504 CAATCTCTGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.12, C:0.09, G:0.16, T:0.62


Consensus pattern (15 bp):   
GTTTAATTGCTTTCT
Done.