Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024303.1 Corchorus olitorius cultivar O-4 contig24336, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60694

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17145--17179
2
17.5
2
100
0
70
51
0
0
48
1.00
19019--19056
19
2.0
20
84
5
51
55
15
0
28
1.41
20453--20527
10
8.4
9
71
22
61
33
0
13
53
1.40
20476--20539
18
3.6
18
89
2
94
32
1
15
50
1.54
20464--20546
36
2.3
37
87
10
134
33
1
14
50
1.51
20604--20640
16
2.4
15
95
4
65
56
5
0
37
1.22
20619--20654
18
2.0
18
88
0
54
55
11
0
33
1.35
21178--21241
32
2.0
32
93
0
110
34
37
6
21
1.79
21349--21448
51
2.0
51
82
4
121
21
25
13
41
1.88
29353--29381
14
2.0
15
93
6
51
62
3
6
27
1.37
29628--29715
16
5.5
16
81
9
81
7
11
35
45
1.69
29687--29718
15
2.1
15
94
0
55
0
15
37
46
1.46
31463--31511
24
2.0
24
96
0
89
32
24
18
24
1.97
32537--33016
239
2.0
239
99
0
951
30
15
14
38
1.88
33424--33453
16
1.9
15
93
6
51
0
30
60
10
1.30
33623--33649
13
2.1
13
100
0
54
62
0
0
37
0.95
33730--33790
29
2.1
30
84
9
81
44
1
4
49
1.33
36964--37074
44
2.6
43
84
7
147
40
27
8
23
1.83
37078--37236
41
3.8
41
82
6
203
40
25
10
22
1.86
37011--37142
68
1.9
68
93
3
230
42
25
7
24
1.81
37079--37246
84
2.0
84
94
0
291
39
25
10
24
1.86
37304--37399
2
46.5
2
93
6
165
47
0
3
48
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40963--41008
21
2.2
21
88
0
65
41
4
39
15
1.67
55594--55872
41
6.6
41
79
10
269
39
26
10
24
1.87
55594--55871
84
3.3
82
87
6
369
39
25
10
24
1.87

Tables:   1

The End!