Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024304.1 Corchorus olitorius cultivar O-4 contig24337, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2782
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26


Found at i:2409 original size:39 final size:39

Alignment explanation


    Indices: 2355--2604  Score: 446
    Period size: 39  Copynumber: 6.4  Consensus size: 39

       2345 CTTAATCTTT

                                                   
       2355 CAGGCCATCTTTTCAGCATTTATCAAAGTTGGTTGGAAA
          1 CAGGCCATCTTTTCAGCATTTATCAAAGTTGGTTGGAAA

                                                   
       2394 CAGGCCATCTTTTCAGCATTTATCAAAGTTGGTTGGAAA
          1 CAGGCCATCTTTTCAGCATTTATCAAAGTTGGTTGGAAA

                                                   
       2433 CAGGCCATCTTTTCAGCATTTATCAAAGTTGGTTGGAAA
          1 CAGGCCATCTTTTCAGCATTTATCAAAGTTGGTTGGAAA

                                            *      
       2472 CAGGCCATCTTTTCAGCATTTATCAAAGTTGGATGGAAA
          1 CAGGCCATCTTTTCAGCATTTATCAAAGTTGGTTGGAAA

                                                   
       2511 CAGGCCATCTTTTCAGCATTTATCAAAGTTGGTTGGAAA
          1 CAGGCCATCTTTTCAGCATTTATCAAAGTTGGTTGGAAA

                   *                       **      
       2550 CAGGCCAACTTTTCAGCATTTATCAAAGTTGACTGGAAA
          1 CAGGCCATCTTTTCAGCATTTATCAAAGTTGGTTGGAAA

                *  *        
       2589 CAGGTCAACTTTTCAG
          1 CAGGCCATCTTTTCAG

       2605 TTTTATGTTG


Statistics
Matches: 205,  Mismatches: 6, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  39  205  1.00

ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32


Consensus pattern (39 bp):   
CAGGCCATCTTTTCAGCATTTATCAAAGTTGGTTGGAAA

Done.