Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024306.1 Corchorus olitorius cultivar O-4 contig24339, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8218
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25


Found at i:7937 original size:12 final size:13

Alignment explanation


    Indices: 7914--7943  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

       7904 ACTAGTAATT

                         
       7914 AAAATCAATCAAG
          1 AAAATCAATCAAG

                         
       7927 AAAAT-AATCAAG
          1 AAAATCAATCAAG

                 
       7939 AAAAT
          1 AAAAT

       7944 TAAAGAAAAC


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   12  0.71
  13    5  0.29

ACGTcount: A:0.67, C:0.10, G:0.07, T:0.17


Consensus pattern (13 bp):   
AAAATCAATCAAG
Done.