Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024307.1 Corchorus olitorius cultivar O-4 contig24340, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7892
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:5447 original size:23 final size:23

Alignment explanation


    Indices: 5420--5463  Score: 79
    Period size: 23  Copynumber: 1.9  Consensus size: 23

       5410 TTTTCGCATA

                                   
       5420 TTTATTTCTGCATTAGTATATCT
          1 TTTATTTCTGCATTAGTATATCT

                          *      
       5443 TTTATTTCTGCATTTGTATAT
          1 TTTATTTCTGCATTAGTATAT

       5464 TGCATTAAGG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  23   20  1.00

ACGTcount: A:0.20, C:0.11, G:0.09, T:0.59


Consensus pattern (23 bp):   
TTTATTTCTGCATTAGTATATCT

Found at i:7757 original size:13 final size:13

Alignment explanation


    Indices: 7739--7763  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       7729 TTTGAAGACC

                         
       7739 ATTTGAAGACTTA
          1 ATTTGAAGACTTA

                        
       7752 ATTTGAAGACTT
          1 ATTTGAAGACTT

       7764 GAAGACTTTG


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40


Consensus pattern (13 bp):   
ATTTGAAGACTTA
Done.