Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024313.1 Corchorus olitorius cultivar O-4 contig24346, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35236

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
433--475
22
1.9
23
95
4
79
37
13
23
25
1.92
3510--3592
32
2.6
32
100
0
166
32
12
12
43
1.79
7177--7221
3
15.0
3
100
0
90
66
0
0
33
0.92
15980--16564
22
26.8
22
68
14
232
35
16
11
36
1.84
15955--16137
66
2.8
66
79
8
176
37
16
11
34
1.85
17069--17169
31
3.3
31
77
5
96
40
16
6
35
1.76
20505--20543
13
3.0
13
84
0
60
7
41
46
5
1.55
20612--20655
20
2.2
20
88
8
63
65
0
29
4
1.12
25236--25346
43
2.5
44
86
4
154
47
7
5
39
1.54
25236--25355
44
2.7
44
85
6
154
50
6
5
37
1.50
25492--25531
2
20.0
2
94
0
71
47
0
0
52
1.00
29813--29856
23
1.9
23
81
9
54
61
0
13
25
1.32
29815--30012
104
1.9
103
86
6
283
50
2
11
35
1.52
31787--31829
12
3.2
13
80
12
52
53
20
6
18
1.67
32713--32754
11
4.0
11
87
9
61
0
26
0
73
0.83
34732--34759
12
2.3
12
100
0
56
50
32
17
0
1.47

Tables:   1

The End!