Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024314.1 Corchorus olitorius cultivar O-4 contig24347, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15594

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
427--484
2
29.5
2
86
10
84
46
1
1
50
1.22
1709--2282
22
26.4
22
68
13
149
35
16
9
37
1.82
2006--2107
23
4.5
23
80
4
91
39
16
7
36
1.78
2359--2482
22
5.6
22
76
5
90
33
14
10
41
1.80
2354--2543
44
4.4
44
74
8
135
32
13
10
43
1.78
2442--2543
40
2.4
42
80
8
127
33
11
10
44
1.76
2442--2567
22
5.8
22
74
13
93
33
12
11
42
1.78
2641--2785
22
6.7
22
73
10
120
36
19
9
34
1.84
2894--2989
22
4.3
23
78
12
103
35
14
10
39
1.80
2893--3020
66
1.9
66
82
6
161
36
14
10
39
1.79
3185--3224
19
2.0
20
90
4
64
62
0
2
35
1.09
3196--3236
19
2.2
19
86
8
57
68
0
0
31
0.90
3477--3515
13
2.9
13
82
17
53
46
0
0
53
1.00
5706--5810
51
2.1
51
96
0
192
17
10
30
41
1.83
10485--10580
31
3.2
31
73
11
90
32
19
12
35
1.89

Tables:   1

The End!