Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024319.1 Corchorus olitorius cultivar O-4 contig24352, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66843

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3509--3557
12
4.3
12
82
15
59
30
0
14
55
1.40
7450--7561
36
3.2
36
65
23
94
39
8
17
34
1.80
7407--7599
68
2.9
66
86
4
253
39
9
15
35
1.80
14434--14567
66
2.0
66
97
0
250
39
17
29
12
1.87
15266--15485
115
1.9
115
96
0
404
35
14
17
33
1.89
15609--15643
11
3.2
11
83
0
52
77
17
5
0
0.96
19420--19445
13
2.0
13
100
0
52
15
0
0
84
0.62
27658--27691
17
2.0
17
100
0
68
29
29
11
29
1.92
37616--37686
37
1.9
37
94
0
124
38
8
16
36
1.80
38934--38963
15
2.0
15
100
0
60
20
13
33
33
1.91
40184--40254
37
1.9
37
91
5
117
39
8
15
36
1.78
40956--40987
15
2.1
15
94
0
55
31
15
25
28
1.96
41247--41322
31
2.4
32
85
10
104
69
1
13
15
1.25
45500--45529
14
2.1
14
93
0
51
36
0
6
56
1.26
47483--47535
20
2.7
20
96
0
97
9
24
26
39
1.86
51306--51410
54
1.9
54
100
0
210
25
18
26
29
1.98
52945--52987
20
2.2
20
86
0
59
13
23
18
44
1.86
54266--54530
132
2.0
133
86
5
378
38
8
3
49
1.51
56445--56477
15
2.2
15
100
0
66
51
0
24
24
1.48
59113--59240
11
12.2
11
77
6
70
58
0
2
39
1.11
59127--59237
9
11.2
9
77
17
105
57
0
2
39
1.13
59239--59281
9
4.7
9
82
5
59
27
0
2
69
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60373--60405
1
33.0
1
100
0
66
0
0
0
100
0.00
60738--60782
18
2.5
18
82
7
56
68
2
2
26
1.12
65254--65302
21
2.3
21
82
6
55
40
16
28
14
1.87

Tables:   1

The End!