Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024322.1 Corchorus olitorius cultivar O-4 contig24355, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 615

Length: 1025
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.41


Found at i:358 original size:154 final size:154

Alignment explanation


    Indices: 9--1021  Score: 1380
    Period size: 154  Copynumber: 6.6  Consensus size: 154

          1 CCTTTCGG

                       **         *                           *      *      *
          9 GGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGAAACCCTCGATGCCTTTCTTACCATTGG
          1 GGCCCATTAGTGACGTTTTGAACCGTCTTCGATTTGGAAACCCTCGATGCTTTTCTTTCCATTGT

                          *                                *      *          
         74 TTATGGCCTAACTAAAATCATTTTAGTGAGATTAGTCCACTGTGAA-ATTTTAGGTCATTTGGAA
         66 TTATGGCCTAACTATAATCATTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAA

                                     
        138 CACCTGTTATTTTGTGCCTT-TC-A
        131 CACCTGTTATTTTGTG-CTTATCGA

                                                                *            
        161 GGGCCCATTAGTGACGTTTTGAACCGTCTTCGATTT-GACAACCCTCGATGCCTTTCTTTCCATT
          1 -GGCCCATTAGTGACGTTTTGAACCGTCTTCGATTTGGA-AACCCTCGATGCTTTTCTTTCCATT

                        *                                                    
        225 GTTTATGGCCTATCTATAATCATTTT-GCTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTG
         64 GTTTATGGCCTAACTATAATCATTTTAG-TGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTG

               *  *          *         
        289 GAATACTTGTTATTTTGAGCTTATCGA
        128 GAACACCTGTTATTTTGTGCTTATCGA

                                  *                                          
        316 GGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGAAACCCTCGATGCTTTTCTTTCCATTGT
          1 GGCCCATTAGTGACGTTTTGAACCGTCTTCGATTTGGAAACCCTCGATGCTTTTCTTTCCATTGT

                                                                             
        381 TTATGGCCTAACTATAATCATTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAA
         66 TTATGGCCTAACTATAATCATTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAA

                             *      
        446 CACCTGTTATTTTGTGCCTATC-A
        131 CACCTGTTATTTTGTGCTTATCGA

               *                                  *     *  *                 
        469 GGGTCCATTAGTGACGTTTTGAACCGTCTTCGATTTCGCAAA-CTTCAATGCTTTTCTTTCCATT
          1 -GGCCCATTAGTGACGTTTTGAACCGTCTTCGATTT-GGAAACCCTCGATGCTTTTCTTTCCATT

                                                                             
        533 GTTTATGGCCTAACTATAATCATTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
         64 GTTTATGGCCTAACTATAATCATTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG

                 *                    *
        598 AACACTTGTTATTTTGTGCCTT-TCGG
        129 AACACCTGTTATTTTGTG-CTTATCGA

                       **                                     *              
        624 GGCCCATTAGTTCCGTTTTGAA------TCGATTTGGAAACCCTCGATGCCTTTCTTTCCATTGT
          1 GGCCCATTAGTGACGTTTTGAACCGTCTTCGATTTGGAAACCCTCGATGCTTTTCTTTCCATTGT

                      *                   *   *                              
        683 TTATGGCCTATCTATAATCATTTT-GCTGAAATTTGTCCACTGTGAAGTTTTTAGCTCATTTGGA
         66 TTATGGCCTAACTATAATCATTTTAG-TGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGA

                *          *        *
        747 ACACTTGTTATTTTGAGCTTATCGG
        130 ACACCTGTTATTTTGTGCTTATCGA

                       *          *                       *   *              
        772 GGCCCATTAGTCACGTTTTGAATCGTCTTCGATTTGGCAAA-CCTCAAT-TTTTTCTTTCCATTG
          1 GGCCCATTAGTGACGTTTTGAACCGTCTTCGATTTGG-AAACCCTCGATGCTTTTCTTTCCATTG

                                               *    *       *              * 
        835 TTTATGGCCTAACTATAATCATTTTAGTGAGATTACTCCATTGTGAA-ATTTTAGCTCATTTGAA
         65 TTTATGGCCTAACTATAATCATTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGA

                              *    * 
        899 ACACCTGTTATTTTGTGCCTATCAA
        130 ACACCTGTTATTTTGTGCTTATCGA

                                      *              * *  *             **   
        924 GGCCCATTAGTGACGTTTTGAACCGTTTTCGATTT-GACAAACTTCAATGCTTTTCTTTCTGTTG
          1 GGCCCATTAGTGACGTTTTGAACCGTCTTCGATTTGGA-AACCCTCGATGCTTTTCTTTCCATTG

                                              
        988 TTTATGGCCTAACTATAATCATTTTAGTGAGATT
         65 TTTATGGCCTAACTATAATCATTTTAGTGAGATT

       1022 TAGT


Statistics
Matches: 773,  Mismatches: 62, Indels: 50
        0.87            0.07        0.06

Matches are distributed among these distances:
 147    8  0.01
 148  127  0.16
 150    1  0.00
 151    3  0.00
 152   76  0.10
 153  202  0.26
 154  343  0.44
 155   13  0.02

ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41


Consensus pattern (154 bp):   
GGCCCATTAGTGACGTTTTGAACCGTCTTCGATTTGGAAACCCTCGATGCTTTTCTTTCCATTGT
TTATGGCCTAACTATAATCATTTTAGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAA
CACCTGTTATTTTGTGCTTATCGA

Done.