Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024326.1 Corchorus olitorius cultivar O-4 contig24359, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6089

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--340
154
2.2
154
96
0
635
18
20
18
42
1.90
2548--2581
6
5.8
6
89
6
52
70
2
8
17
1.25
2540--2584
11
4.2
11
83
10
58
73
2
8
15
1.18
2548--2581
17
1.9
18
94
5
61
70
2
8
17
1.25
2958--3010
13
3.5
15
80
19
58
79
11
0
9
0.94
2972--3028
12
4.7
12
87
8
71
77
12
0
10
1.00
3007--3033
6
4.5
6
100
0
54
70
14
0
14
1.17
4305--4488
50
3.7
50
91
1
271
29
26
13
30
1.94
4508--4879
35
10.7
35
91
3
531
29
18
22
29
1.97
5169--5246
29
2.8
28
86
3
111
19
16
23
41
1.90
5670--5782
21
5.4
21
91
2
158
28
18
26
26
1.98

Tables:   1

The End!