Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024331.1 Corchorus olitorius cultivar O-4 contig24364, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35782

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5797--5839
22
2.0
22
90
0
68
20
23
32
23
1.98
5869--5911
21
2.0
21
90
0
68
20
23
32
23
1.98
6319--6382
34
1.9
34
87
6
96
43
15
14
26
1.85
6313--6464
81
1.9
76
83
9
189
42
15
13
29
1.84
6406--6501
34
2.7
35
87
4
122
34
18
14
32
1.91
12382--13138
47
16.0
48
79
13
398
29
20
5
44
1.73
12407--12546
54
2.6
54
86
2
201
30
17
5
47
1.68
12498--13138
94
6.9
94
90
3
960
29
21
5
43
1.74
12498--13138
141
4.6
140
89
3
976
29
21
5
43
1.74
13185--13233
22
2.2
22
89
7
73
14
32
4
48
1.62
16794--16841
22
2.2
22
88
7
71
27
16
10
45
1.80
16878--16931
28
1.9
28
84
0
72
33
14
9
42
1.78
17054--17113
22
2.7
22
82
10
70
38
11
15
35
1.83
17078--17262
22
8.3
22
77
3
138
35
18
10
35
1.85
17125--17185
23
2.7
23
89
2
88
37
21
3
37
1.70
17326--17535
22
9.5
22
73
11
115
38
18
8
34
1.81
17300--17530
44
5.2
43
73
8
160
38
16
9
36
1.80
17312--17535
66
3.4
64
82
6
234
38
17
8
34
1.82
17698--17736
20
2.0
20
85
10
53
64
2
5
28
1.28
19027--19066
3
13.3
3
83
0
53
0
30
0
70
0.88
19027--19061
15
2.3
15
100
0
70
0
28
0
71
0.86
26333--26364
2
16.0
2
100
0
64
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28972--29054
30
2.8
30
98
0
157
49
2
20
27
1.61
32348--32722
202
1.9
203
84
3
515
31
17
16
34
1.92
35227--35301
40
1.9
38
86
5
105
28
13
24
34
1.93
35270--35331
30
2.1
30
90
0
97
30
17
17
33
1.94

Tables:   1

The End!