Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024333.1 Corchorus olitorius cultivar O-4 contig24366, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48021

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3329--3355
4
6.8
4
100
0
54
25
0
0
74
0.83
3601--3630
2
15.0
2
100
0
60
50
0
0
50
1.00
4512--4585
31
2.5
27
79
14
76
36
8
16
39
1.78
4524--4582
31
2.0
31
86
6
86
35
8
15
40
1.77
6995--7034
21
2.0
20
90
5
62
22
17
12
47
1.81
9106--9141
2
18.0
2
88
11
56
47
0
2
50
1.15
9331--9439
51
2.1
51
96
0
200
42
11
14
32
1.81
10050--10117
32
2.1
32
100
0
136
45
11
5
36
1.65
17871--17987
59
2.0
56
91
4
189
35
23
2
38
1.69
18987--19029
14
3.2
13
90
6
59
44
2
2
51
1.27
18987--19017
2
16.0
2
93
6
55
48
0
0
51
1.00
31891--31945
27
2.0
27
100
0
110
36
14
7
41
1.74
32096--32128
3
11.0
3
100
0
66
66
33
0
0
0.92
35451--35477
2
13.5
2
100
0
54
51
0
0
48
1.00
38979--39068
45
2.1
43
87
6
128
36
24
5
33
1.79
40220--40271
23
2.3
23
82
0
59
7
19
44
28
1.78
40403--40452
13
3.9
13
82
7
59
54
2
0
44
1.11
41012--41045
2
17.0
2
100
0
68
50
0
0
50
1.00
41225--41281
23
2.5
23
82
8
71
5
24
45
24
1.74
41288--41331
16
2.8
16
89
0
70
11
15
38
34
1.84

Tables:   1

The End!