Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024334.1 Corchorus olitorius cultivar O-4 contig24367, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55851

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21--45
3
8.3
3
100
0
50
0
0
32
68
0.90
1849--1909
32
1.9
32
96
0
113
26
21
6
45
1.76
3695--3828
32
4.2
32
87
2
189
4
38
38
18
1.71
3755--3811
19
3.3
19
68
27
63
3
40
38
17
1.67
3777--3863
44
1.9
45
88
4
131
4
37
37
19
1.73
3935--3965
3
10.0
3
93
6
53
35
0
0
64
0.94
4259--4291
3
11.0
3
93
0
57
69
0
0
30
0.88
5087--5127
2
20.5
2
100
0
82
51
0
0
48
1.00
7456--7521
33
2.0
33
82
5
80
25
18
12
43
1.84
24248--24283
1
36.0
1
100
0
72
100
0
0
0
0.00
25734--25778
24
2.0
23
86
8
65
28
15
8
46
1.76
26967--26992
6
4.3
6
100
0
52
50
19
15
15
1.79
28785--28812
3
9.3
3
100
0
56
35
0
0
64
0.94
33146--33175
2
15.0
2
100
0
60
50
0
0
50
1.00
35102--35141
21
2.1
19
86
13
55
20
25
15
40
1.90
37319--37353
2
17.5
2
100
0
70
51
0
0
48
1.00
39784--39835
25
2.0
25
85
7
68
30
19
15
34
1.93
40284--40324
18
2.3
19
79
12
50
48
4
17
29
1.67
41557--41639
42
2.0
42
92
0
139
21
16
18
43
1.88

Tables:   1

The End!