Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024336.1 Corchorus olitorius cultivar O-4 contig24369, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5177
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33


Found at i:3565 original size:15 final size:15

Alignment explanation


    Indices: 3545--3586  Score: 84
    Period size: 15  Copynumber: 2.8  Consensus size: 15

       3535 TTAAATACTA

                           
       3545 GCATTTCAAAATGAT
          1 GCATTTCAAAATGAT

                           
       3560 GCATTTCAAAATGAT
          1 GCATTTCAAAATGAT

                        
       3575 GCATTTCAAAAT
          1 GCATTTCAAAAT

       3587 TCTTTCTTTT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   27  1.00

ACGTcount: A:0.40, C:0.14, G:0.12, T:0.33


Consensus pattern (15 bp):   
GCATTTCAAAATGAT
Done.