Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024338.1 Corchorus olitorius cultivar O-4 contig24371, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 670

Length: 1117
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28


Found at i:545 original size:18 final size:18

Alignment explanation


    Indices: 522--581  Score: 66
    Period size: 18  Copynumber: 3.3  Consensus size: 18

        512 TTGCGGTAGC

                              
        522 GGAACATCCTGCGGCAAT
          1 GGAACATCCTGCGGCAAT

             *     *   ** * * 
        540 GCAACATTCTGTAGTAGT
          1 GGAACATCCTGCGGCAAT

                              
        558 GGAACATCCTGCGGCAAT
          1 GGAACATCCTGCGGCAAT

                  
        576 GGAACA
          1 GGAACA

        582 ATATTTTGTA


Statistics
Matches: 30,  Mismatches: 12, Indels: 0
        0.71            0.29        0.00

Matches are distributed among these distances:
  18   30  1.00

ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20


Consensus pattern (18 bp):   
GGAACATCCTGCGGCAAT
Done.