Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024341.1 Corchorus olitorius cultivar O-4 contig24374, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4422
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:2373 original size:15 final size:16

Alignment explanation


    Indices: 2345--2384  Score: 64
    Period size: 15  Copynumber: 2.6  Consensus size: 16

       2335 GCTTTGTTTT

                            
       2345 TTGTTTTCTAGTTTAA
          1 TTGTTTTCTAGTTTAA

                            
       2361 TTGTTTTCT-GTTTAA
          1 TTGTTTTCTAGTTTAA

               *     
       2376 TTGCTTTCT
          1 TTGTTTTCT

       2385 CTCAACCTCT


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  15   14  0.61
  16    9  0.39

ACGTcount: A:0.12, C:0.10, G:0.12, T:0.65


Consensus pattern (16 bp):   
TTGTTTTCTAGTTTAA
Done.