Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024346.1 Corchorus olitorius cultivar O-4 contig24379, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 853

Length: 1423
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.29


Found at i:408 original size:11 final size:11

Alignment explanation


    Indices: 376--408  Score: 50
    Period size: 10  Copynumber: 3.0  Consensus size: 11

        366 GAGTGTTCCA

                        
        376 TTTTTCACTTTT
          1 TTTTTCA-TTTT

                       
        388 TTTTTC-TTTT
          1 TTTTTCATTTT

                       
        398 TTTTTCATTTT
          1 TTTTTCATTTT

        409 CCAGAGGGAC


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  10   10  0.50
  11    4  0.20
  12    6  0.30

ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82


Consensus pattern (11 bp):   
TTTTTCATTTT

Found at i:1161 original size:25 final size:26

Alignment explanation


    Indices: 1133--1189  Score: 73
    Period size: 27  Copynumber: 2.2  Consensus size: 26

       1123 AATGCAACGC

                          *           
       1133 ATGCAAACA-AAA-GAAAATGAAAAA
          1 ATGCAAACATAAACAAAAATGAAAAA

                                  *    
       1157 TATGCAAACATAAACAAAAATGCAAAA
          1 -ATGCAAACATAAACAAAAATGAAAAA

                  
       1184 ATGCAA
          1 ATGCAA

       1190 TTTTTTTTCC


Statistics
Matches: 28,  Mismatches: 2, Indels: 3
        0.85            0.06        0.09

Matches are distributed among these distances:
  25    9  0.32
  26    9  0.32
  27   10  0.36

ACGTcount: A:0.65, C:0.12, G:0.11, T:0.12


Consensus pattern (26 bp):   
ATGCAAACATAAACAAAAATGAAAAA

Done.