Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024352.1 Corchorus olitorius cultivar O-4 contig24385, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5173
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28


Found at i:4403 original size:22 final size:22

Alignment explanation


    Indices: 4356--4397  Score: 66
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       4346 CTCGGTGGCA

                                  
       4356 CCCGGACATGACTAGGCCATAG
          1 CCCGGACATGACTAGGCCATAG

                 *       *      
       4378 CCCGGTCATGACTCGGCCAT
          1 CCCGGACATGACTAGGCCAT

       4398 GTCCCGCGCC


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.21, C:0.36, G:0.26, T:0.17


Consensus pattern (22 bp):   
CCCGGACATGACTAGGCCATAG

Found at i:5068 original size:27 final size:27

Alignment explanation


    Indices: 5030--5102  Score: 110
    Period size: 27  Copynumber: 2.7  Consensus size: 27

       5020 GGTCATCTAG

                *                      
       5030 GGGGTATTTTGGTCATTTGCACATCCA
          1 GGGGCATTTTGGTCATTTGCACATCCA

                                  * *  
       5057 GGGGCATTTTGGTCATTTGCACGTTCA
          1 GGGGCATTTTGGTCATTTGCACATCCA

                               
       5084 GGGGTCATTTTGGTCATTT
          1 GGGG-CATTTTGGTCATTT

       5103 TAGGATCACT


Statistics
Matches: 42,  Mismatches: 3, Indels: 1
        0.91            0.07        0.02

Matches are distributed among these distances:
  27   28  0.67
  28   14  0.33

ACGTcount: A:0.15, C:0.16, G:0.29, T:0.40


Consensus pattern (27 bp):   
GGGGCATTTTGGTCATTTGCACATCCA
Done.