Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024356.1 Corchorus olitorius cultivar O-4 contig24389, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25379

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
333--413
39
2.0
40
92
2
137
37
3
8
50
1.51
2201--2240
21
1.9
21
85
10
55
42
2
7
47
1.45
6551--6623
23
3.3
23
90
3
114
35
16
6
41
1.75
6532--6636
23
4.8
22
83
5
106
34
16
8
40
1.79
8087--8130
22
2.0
22
86
0
61
43
2
0
54
1.12
9059--9135
22
3.5
22
83
1
93
41
12
7
37
1.73
9055--9157
43
2.4
44
85
4
129
42
12
8
35
1.74
12708--12790
33
2.4
35
84
8
116
38
4
10
45
1.60
14456--14483
14
2.0
14
100
0
56
28
35
21
14
1.92
16860--16896
18
2.1
18
90
10
58
43
5
13
37
1.67
25162--25200
15
2.6
15
95
0
69
35
2
5
56
1.35

Tables:   1

The End!