Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024357.1 Corchorus olitorius cultivar O-4 contig24390, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22998

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1231--1299
35
2.0
35
85
0
93
13
34
37
14
1.85
3635--3686
22
2.4
22
83
0
68
19
9
28
42
1.82
8049--8098
22
2.3
22
82
0
64
22
12
28
38
1.89
10792--10826
11
3.2
11
83
0
52
77
17
5
0
0.96
10797--10845
17
3.1
16
75
18
57
73
16
10
0
1.09
15496--15542
3
15.7
3
91
8
78
65
0
0
34
0.93
15965--15999
3
11.7
3
100
0
70
68
0
0
31
0.90
16708--16935
22
10.5
22
68
14
109
35
14
10
40
1.80
18896--18988
3
30.7
3
95
2
168
66
1
0
32
0.99
19168--19338
22
7.7
22
70
15
84
38
11
10
39
1.76
19168--19273
44
2.3
46
80
6
119
38
10
11
39
1.75
20039--20086
3
16.0
3
91
0
78
64
2
0
33
1.05
20648--20833
22
8.6
21
68
19
100
39
14
7
38
1.74
20643--20833
44
4.4
41
75
16
124
38
14
7
39
1.75
20687--20848
63
2.5
62
79
15
145
39
15
6
38
1.72
20687--20882
22
9.0
22
72
17
144
37
16
6
39
1.74
21563--21595
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!