Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024358.1 Corchorus olitorius cultivar O-4 contig24391, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60396

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
508--569
27
2.3
28
81
15
69
43
4
4
46
1.46
3071--3104
11
3.1
11
91
0
50
41
2
0
55
1.15
3156--3394
22
10.7
22
74
12
161
38
14
9
38
1.78
3201--3371
66
2.6
67
81
7
181
38
17
8
36
1.80
4608--4669
23
2.7
23
90
2
90
43
11
9
35
1.73
8976--9014
18
2.1
18
85
4
51
43
5
20
30
1.73
10735--10787
24
2.2
24
86
6
72
30
9
11
49
1.70
10731--10798
24
2.6
25
75
17
68
33
7
8
50
1.61
17998--18037
18
2.2
18
86
4
53
45
5
20
30
1.72
18091--18123
9
3.7
9
91
0
57
27
30
24
18
1.98
20346--20446
22
4.6
21
72
12
87
33
16
8
40
1.80
20386--20451
22
3.0
22
84
8
89
36
19
9
34
1.84
21791--21934
22
6.6
22
70
15
102
37
15
7
38
1.77
21791--21933
66
2.2
65
80
6
155
37
16
6
39
1.75
22117--22196
22
3.6
22
89
0
115
31
13
11
43
1.79
22282--22336
28
1.9
28
85
10
76
36
18
10
34
1.86
22069--22365
22
12.8
22
69
19
112
31
16
10
41
1.82
22364--22533
22
7.6
22
68
21
79
38
15
9
35
1.80
22475--22569
45
2.1
44
78
5
102
38
12
8
40
1.74
22475--22578
22
4.7
22
77
4
93
39
12
7
40
1.72
22718--22742
2
12.5
2
100
0
50
48
0
0
52
1.00
23302--23384
38
2.2
38
95
0
148
28
31
9
30
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24824--24861
18
2.1
18
100
0
76
42
10
18
28
1.83
24562--25129
293
1.9
293
94
0
994
36
15
16
31
1.90
34473--34507
11
3.2
11
83
0
52
77
17
5
0
0.96
40570--40813
130
1.9
130
93
2
418
44
4
15
35
1.68
41463--41666
103
2.0
102
87
4
295
10
19
14
56
1.66
49671--49713
17
2.5
19
82
17
58
62
0
0
37
0.95
49671--49713
11
3.8
11
82
11
52
62
0
0
37
0.95
55510--55589
21
3.5
24
71
25
66
57
2
2
37
1.26
58304--58332
14
2.0
15
93
6
51
55
3
6
34
1.44
59167--59200
14
2.4
14
95
0
59
23
8
0
67
1.18
59228--59258
15
2.1
15
100
0
62
19
6
12
61
1.53

Tables:   1

The End!