Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024359.1 Corchorus olitorius cultivar O-4 contig24392, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2180
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.31


Found at i:437 original size:25 final size:24

Alignment explanation


    Indices: 386--442  Score: 80
    Period size: 25  Copynumber: 2.4  Consensus size: 24

        376 GTCAGTCTTG

                                *   
        386 AATTT-TTTAATGTTTAATTCTTA
          1 AATTTATTTAATGTTTAATTATTA

                                    *
        409 AATTTATTTAATGTCTTAATTATTC
          1 AATTTATTTAATGT-TTAATTATTA

                     
        434 AATTTATTT
          1 AATTTATTT

        443 TACAATCCAC


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  23    5  0.17
  24    8  0.27
  25   17  0.57

ACGTcount: A:0.32, C:0.05, G:0.04, T:0.60


Consensus pattern (24 bp):   
AATTTATTTAATGTTTAATTATTA
Done.