Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024366.1 Corchorus olitorius cultivar O-4 contig24399, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21963

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
781--832
19
2.7
20
82
14
56
30
3
1
63
1.23
2968--2995
3
9.3
3
100
0
56
35
64
0
0
0.94
9485--9565
38
2.1
38
86
0
108
27
19
23
29
1.98
9524--9639
53
2.1
55
92
3
191
27
17
24
31
1.97
9612--9970
35
10.3
35
91
1
560
27
13
20
38
1.90
9612--10528
105
8.6
105
89
5
1322
28
13
20
38
1.90
9957--9985
14
2.1
14
100
0
58
27
6
13
51
1.66
9922--10019
49
2.0
49
95
0
178
26
10
20
42
1.84
9971--10528
35
15.8
35
94
1
920
28
13
20
37
1.90
9887--10054
84
2.0
84
91
0
273
27
11
20
40
1.87
9971--10528
106
5.3
105
93
2
920
28
13
20
37
1.90
15728--15915
22
8.5
21
70
8
90
36
7
17
38
1.79
15920--16806
22
40.7
21
67
16
123
37
10
16
35
1.83
15920--16824
44
20.8
43
66
15
169
37
10
16
35
1.82
16167--16806
22
29.7
22
66
18
165
37
10
15
36
1.82
16104--16325
65
3.4
66
75
8
168
41
10
15
32
1.81
16425--16625
83
2.4
85
81
10
216
38
8
14
37
1.78
16722--16765
23
1.9
23
90
0
70
29
13
18
38
1.89
16788--16833
22
2.1
22
88
4
67
52
4
15
28
1.61
19073--19097
6
4.2
6
100
0
50
0
16
0
84
0.63

Tables:   1

The End!