Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002437.1 Corchorus olitorius cultivar O-4 contig02437, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1077
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.33


Found at i:954 original size:21 final size:21

Alignment explanation


    Indices: 916--957  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        906 AGCTGTGCAA

                       ***       
        916 AATAACCAGTTTTTATAGCTT
          1 AATAACCAGTTACCATAGCTT

                                 
        937 AATAACCAGTTACCATAGCTT
          1 AATAACCAGTTACCATAGCTT

        958 TAAGATCATC


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36


Consensus pattern (21 bp):   
AATAACCAGTTACCATAGCTT
Done.