Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01024371.1 Corchorus olitorius cultivar O-4 contig24404, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 34943
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.31
Found at i:205 original size:16 final size:15
Alignment explanation
Indices: 167--208 Score: 66
Period size: 15 Copynumber: 2.7 Consensus size: 15
157 ACAGAGATTG
*
167 ACAGAAAGCAATTAA
1 ACAGAAAACAATTAA
182 ACAGAAAACAATTAA
1 ACAGAAAACAATTAA
197 ACTAGAAAACAA
1 AC-AGAAAACAA
209 AGCAAAGTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 16 0.64
16 9 0.36
ACGTcount: A:0.64, C:0.14, G:0.10, T:0.12
Consensus pattern (15 bp):
ACAGAAAACAATTAA
Found at i:2092 original size:35 final size:35
Alignment explanation
Indices: 2047--2402 Score: 403
Period size: 35 Copynumber: 10.0 Consensus size: 35
2037 ATCAATGTGA
*
2047 AGATCAACTCTGATCATCGAAAACTTCTTGAAATA
1 AGATCAACTCTGATCATCGAAAACTTCTTGAAATG
** *
2082 AGATCAACTCTGATCATAAAAAAGAACTTCTTGAAAGG
1 AGATCAACTCTGATCAT--CGAA-AACTTCTTGAAATG
* **
2120 AGATCAACTCTGACCATATAAAAAACTTCTTGAAATG
1 AGATCAACTCTGATC--ATCGAAAACTTCTTGAAATG
* **
2157 AGATCAACTCTGATCAACGAAAAC-TCTTTGAAACA
1 AGATCAACTCTGATCATCGAAAACTTC-TTGAAATG
* *
2192 AAATCAACTCTGATCATCGAAAACTTCTTGTAATG
1 AGATCAACTCTGATCATCGAAAACTTCTTGAAATG
* * * *
2227 AGATCAACTTTGACCAT-AAAAACATCTTGAAAATG
1 AGATCAACTCTGATCATCGAAAACTTCTTG-AAATG
** * *
2262 AGATCAACTCTGATCATAAAAAACTTCCTGAAAGG
1 AGATCAACTCTGATCATCGAAAACTTCTTGAAATG
*
2297 AGATCAACTCTGATCA-CTGAAAACTTCTTGAAACG
1 AGATCAACTCTGATCATC-GAAAACTTCTTGAAATG
* *
2332 AGATCAACTCGGATCATCGAAAACTTCTTGAAACG
1 AGATCAACTCTGATCATCGAAAACTTCTTGAAATG
*
2367 AGATCAACTCTGATCATCGAAAACTTCTTGGAATG
1 AGATCAACTCTGATCATCGAAAACTTCTTGAAATG
2402 A
1 A
2403 CCGCACTGGA
Statistics
Matches: 274, Mismatches: 36, Indels: 22
0.83 0.11 0.07
Matches are distributed among these distances:
34 12 0.04
35 188 0.69
36 13 0.05
37 29 0.11
38 30 0.11
40 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (35 bp):
AGATCAACTCTGATCATCGAAAACTTCTTGAAATG
Found at i:2480 original size:54 final size:54
Alignment explanation
Indices: 2367--2472 Score: 185
Period size: 54 Copynumber: 2.0 Consensus size: 54
2357 TCTTGAAACG
*
2367 AGATCAACTCTGATCATCGAAAACTTCTTGGAATGACCGCACTGGATCATCTGA
1 AGATCAACTCTGACCATCGAAAACTTCTTGGAATGACCGCACTGGATCATCTGA
* *
2421 AGATCAACTCTGACCATTGAAAACTTCTTGGAATGACCGCATTGGATCATCT
1 AGATCAACTCTGACCATCGAAAACTTCTTGGAATGACCGCACTGGATCATCT
2473 TAGGATCACC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (54 bp):
AGATCAACTCTGACCATCGAAAACTTCTTGGAATGACCGCACTGGATCATCTGA
Found at i:6878 original size:4 final size:4
Alignment explanation
Indices: 6871--6900 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
6861 TACCAAAGGA
6871 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
6901 GTGAATGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:10555 original size:21 final size:21
Alignment explanation
Indices: 10499--10555 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
10489 TTTATAACAC
*
10499 CTTGTTCCTGCCTCATCTCTT
1 CTTGTGCCTGCCTCATCTCTT
* ** * *
10520 CTTGCGAATGTCTCATTTCTT
1 CTTGTGCCTGCCTCATCTCTT
10541 CTTGTGCCTGCCTCA
1 CTTGTGCCTGCCTCA
10556 GATGTTGGAT
Statistics
Matches: 26, Mismatches: 10, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.09, C:0.33, G:0.14, T:0.44
Consensus pattern (21 bp):
CTTGTGCCTGCCTCATCTCTT
Found at i:14785 original size:19 final size:19
Alignment explanation
Indices: 14761--14870 Score: 73
Period size: 19 Copynumber: 5.5 Consensus size: 19
14751 AAAAAAAAAA
*
14761 AATAAATAATAGCTAAATT
1 AATAAATAATAGTTAAATT
* *
14780 AATAAATAAAAAGATAAATAGT
1 AATAAAT-AATAGTTAAAT--T
14802 AAGTAAATAGATAATAGTTAAATT
1 AA-T--A-A-ATAATAGTTAAATT
*
14826 AATAAATAAATAG-TAAATA
1 AATAAAT-AATAGTTAAATT
*
14845 AATAGATAATAGTTAAA--
1 AATAAATAATAGTTAAATT
14862 AATAAATAA
1 AATAAATAA
14871 AAAGATAAAT
Statistics
Matches: 74, Mismatches: 7, Indels: 22
0.72 0.07 0.21
Matches are distributed among these distances:
17 8 0.11
18 5 0.07
19 24 0.32
20 15 0.20
21 1 0.01
22 3 0.04
23 2 0.03
24 3 0.04
25 1 0.01
26 10 0.14
27 2 0.03
ACGTcount: A:0.63, C:0.01, G:0.08, T:0.28
Consensus pattern (19 bp):
AATAAATAATAGTTAAATT
Found at i:14810 original size:11 final size:11
Alignment explanation
Indices: 14793--14893 Score: 62
Period size: 11 Copynumber: 8.7 Consensus size: 11
14783 AAATAAAAAG
14793 ATAAATAGTAA
1 ATAAATAGTAA
*
14804 GTAAATAGATAA
1 ATAAATAG-TAA
*
14816 TAGTTAAATTAATAA
1 -A--TAAA-TAGTAA
14831 ATAAATAGTAA
1 ATAAATAGTAA
14842 ATAAATAG-ATA
1 ATAAATAGTA-A
** *
14853 ATAGTTA-AAA
1 ATAAATAGTAA
**
14863 ATAAATAAAAA
1 ATAAATAGTAA
14874 GATAAATAGTAA
1 -ATAAATAGTAA
14886 ATAAATAG
1 ATAAATAG
14894 ATAATAGTTC
Statistics
Matches: 71, Mismatches: 10, Indels: 18
0.72 0.10 0.18
Matches are distributed among these distances:
10 7 0.10
11 38 0.54
12 16 0.23
14 1 0.01
15 7 0.10
16 2 0.03
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (11 bp):
ATAAATAGTAA
Found at i:14876 original size:25 final size:25
Alignment explanation
Indices: 14839--14943 Score: 93
Period size: 25 Copynumber: 4.4 Consensus size: 25
14829 AAATAAATAG
*
14839 TAAATAAATAGAT-AATAGTTAAAAA
1 TAAATAAAAAGATAAATAG-TAAAAA
14864 TAAATAAAAAGATAAATAGT--AAA
1 TAAATAAAAAGATAAATAGTAAAAA
*
14887 TAAAT----AGAT-AATAGTTCAAAA
1 TAAATAAAAAGATAAATAG-TAAAAA
14908 TAAATAAAAAGATAAATAGTAAGTAAA
1 TAAATAAAAAGATAAATAGTAA--AAA
14935 T-AATAAAAA
1 TAAATAAAAA
14944 ATCTTTTTGG
Statistics
Matches: 67, Mismatches: 2, Indels: 21
0.74 0.02 0.23
Matches are distributed among these distances:
18 5 0.07
19 5 0.07
21 8 0.12
23 8 0.12
25 19 0.28
26 18 0.27
27 4 0.06
ACGTcount: A:0.66, C:0.01, G:0.09, T:0.25
Consensus pattern (25 bp):
TAAATAAAAAGATAAATAGTAAAAA
Found at i:14881 original size:44 final size:44
Alignment explanation
Indices: 14760--14940 Score: 241
Period size: 44 Copynumber: 4.2 Consensus size: 44
14750 TAAAAAAAAA
* * *
14760 AAATAAATAATAGCTAAATTAATAAATAAAAAGATAAATAGTAAGT
1 AAATAGATAATAGTTAAA--AATAAATAAAAAGATAAATAGTAAAT
*
14806 AAATAGATAATAGTT--AAAT---TAATAA-ATAAATAGTAAAT
1 AAATAGATAATAGTTAAAAATAAATAAAAAGATAAATAGTAAAT
14844 AAATAGATAATAGTTAAAAATAAATAAAAAGATAAATAGTAAAT
1 AAATAGATAATAGTTAAAAATAAATAAAAAGATAAATAGTAAAT
* *
14888 AAATAGATAATAGTTCAAAATAAATAAAAAGATAAATAGTAAGT
1 AAATAGATAATAGTTAAAAATAAATAAAAAGATAAATAGTAAAT
14932 AAATA-ATAA
1 AAATAGATAA
14941 AAAATCTTTT
Statistics
Matches: 122, Mismatches: 7, Indels: 15
0.85 0.05 0.10
Matches are distributed among these distances:
38 27 0.22
39 5 0.04
40 4 0.03
42 3 0.02
43 9 0.07
44 61 0.50
46 13 0.11
ACGTcount: A:0.64, C:0.01, G:0.09, T:0.27
Consensus pattern (44 bp):
AAATAGATAATAGTTAAAAATAAATAAAAAGATAAATAGTAAAT
Found at i:14915 original size:4 final size:4
Alignment explanation
Indices: 14760--14897 Score: 58
Period size: 4 Copynumber: 35.5 Consensus size: 4
14750 TAAAAAAAAA
** * * *
14760 AAAT AAAT -AAT AGCT AAAT TAAT AAAT AAA- AAGAT AAAT -AGT AAGT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AAAT
* ** * * *
14806 AAAT AGAT -AAT AGTT AAAT TAAT AAAT AAAT -AGT AAAT AAAT AGAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
* * *
14852 AATAGT TAA- AAAT AAAT AAA- AAGAT AAAT -AGT AAAT AAAT AGAT AA
1 AA-A-T AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AA
14898 TAGTTCAAAA
Statistics
Matches: 96, Mismatches: 26, Indels: 24
0.66 0.18 0.16
Matches are distributed among these distances:
3 17 0.18
4 71 0.74
5 6 0.06
6 2 0.02
ACGTcount: A:0.64, C:0.01, G:0.09, T:0.27
Consensus pattern (4 bp):
AAAT
Found at i:21797 original size:41 final size:41
Alignment explanation
Indices: 21736--21830 Score: 109
Period size: 41 Copynumber: 2.3 Consensus size: 41
21726 TGCTTCCGTG
* * * *
21736 TTCAATTTAGTCCCCAATTTAGTATTTCATTTATTAATTGA
1 TTCAATTTAGTCCCCAATTTAGGATTTCAGTTACTAATTAA
** * *
21777 TTCAATTTAGTCCCTGATTTAGGATTTTAGTTACTATTTAA
1 TTCAATTTAGTCCCCAATTTAGGATTTCAGTTACTAATTAA
*
21818 TTCAATTTGGTCC
1 TTCAATTTAGTCC
21831 TTATTTGTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.48
Consensus pattern (41 bp):
TTCAATTTAGTCCCCAATTTAGGATTTCAGTTACTAATTAA
Found at i:26348 original size:29 final size:28
Alignment explanation
Indices: 26278--26360 Score: 98
Period size: 28 Copynumber: 2.9 Consensus size: 28
26268 AAATTAAAAG
*
26278 TGAACCTAAAATGACCAAAATG--CCCC
1 TGAACATAAAATGACCAAAATGCCCCCC
**
26304 TGAATGTGCAAAATGACCAAAATGCCCCCC
1 TGAACAT--AAAATGACCAAAATGCCCCCC
26334 TGAACATAAGAATGACCAAAATGCCCC
1 TGAACATAA-AATGACCAAAATGCCCC
26361 TAGATGACCC
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
26 5 0.10
28 17 0.35
29 17 0.35
30 9 0.19
ACGTcount: A:0.41, C:0.29, G:0.14, T:0.16
Consensus pattern (28 bp):
TGAACATAAAATGACCAAAATGCCCCCC
Found at i:26916 original size:30 final size:30
Alignment explanation
Indices: 26880--27547 Score: 935
Period size: 30 Copynumber: 22.1 Consensus size: 30
26870 ACTGATGAAA
26880 CAATGATCCT-AAACCAGGATTAAAATAAAG
1 CAATGATCCTCAAA-CAGGATTAAAATAAAG
* *
26910 CAATGATCCTCAACCAGGAATT-AAATGAAG
1 CAATGATCCTCAAACAGG-ATTAAAATAAAG
* *
26940 CAATGATCCTCAACCAGGATTAACATAAAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
* *
26970 CAATGATCCTCAAACAGGAGTAAAATGAAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
* *
27000 CAATGATCCTCAACCAGGATTAACATAAAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
*
27030 CAATGATCCTCAAACAGGACTAAAATAAAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
* * *
27060 CGACGATCCTCAAACAGGATTAACATAAAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
27090 CAATGATCCTCAAACAGGATTAAAATAAAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
* * * **
27120 CGACGATCCTCAAACAGGATGAGCATAAAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
27150 CAATGATCCTCAAACAGGATTAAAATAAAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
*
27180 CAATGATCCTCAAACAAGATTAAAATAAAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
27210 CAATGATCCTCAAACAGGATTAAAATAAAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
**
27240 CAATGATCCTCAAACAGGATTAAAATGCAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
*
27270 CAATGATCCTCAAACAGGATGTAAAAAATGAAG
1 CAATGATCCTCAAACAGGAT-T--AAAATAAAG
*
27303 CAATGATCCTCAAACAGGATTAAAACAAAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
* *
27333 CAATGATCCTCAACCAGGATTAAAAATGAAG
1 CAATGATCCTCAAACAGGATT-AAAATAAAG
* * *
27364 CGATGATCCTCAACCAGGATTAAAACAAAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
*
27394 CAATGATCCTCAACCAGGATTAAAATAAAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
* * *
27424 CGATGATCCTCAACCAGGATTAAAACAAAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
* *
27454 CAATGATCCTCAACCAGCATTAAAATAAAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
* * *
27484 CGATGATCCTCAACCAGGATTAAAACAAAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
*
27514 CAATGATCCTCAACCAGGATTAAAATAAAG
1 CAATGATCCTCAAACAGGATTAAAATAAAG
27544 CAAT
1 CAAT
27548 CACACAATGA
Statistics
Matches: 574, Mismatches: 57, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
29 3 0.01
30 509 0.89
31 33 0.06
32 1 0.00
33 28 0.05
ACGTcount: A:0.46, C:0.20, G:0.15, T:0.19
Consensus pattern (30 bp):
CAATGATCCTCAAACAGGATTAAAATAAAG
Found at i:27731 original size:23 final size:22
Alignment explanation
Indices: 27705--27771 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 22
27695 ACTTGATGAA
27705 ATCAAATGATACCCGGAGGTTTT
1 ATCAAAT-ATACCCGGAGGTTTT
* **
27728 ATC-AAT-TGCCCGGAGGACTT
1 ATCAAATATACCCGGAGGTTTT
27748 ATCAGAATTAATACCCGGAGGTTT
1 ATCA-AA-T-ATACCCGGAGGTTT
27772 CTAAATTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
20 14 0.42
22 5 0.15
23 4 0.12
25 10 0.30
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (22 bp):
ATCAAATATACCCGGAGGTTTT
Found at i:29674 original size:6 final size:6
Alignment explanation
Indices: 29593--29666 Score: 107
Period size: 6 Copynumber: 12.7 Consensus size: 6
29583 AATCAATTCT
29593 TTTTG- TTTTG- TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
* * *
29639 TTTTGA TTTTTA TTTTCA TTTTTA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTT
29667 TTATTTTTTT
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
5 10 0.15
6 55 0.85
ACGTcount: A:0.14, C:0.01, G:0.12, T:0.73
Consensus pattern (6 bp):
TTTTGA
Found at i:29675 original size:7 final size:6
Alignment explanation
Indices: 29598--29674 Score: 64
Period size: 6 Copynumber: 12.7 Consensus size: 6
29588 ATTCTTTTTG
* * * * * * * *
29598 TTTTGT TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
*
29646 TTTTAT TTTCAT TTTTATT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTA-T TTTTAT TTTT
29675 TTAATTGATT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
6 59 0.91
7 6 0.09
ACGTcount: A:0.14, C:0.01, G:0.10, T:0.74
Consensus pattern (6 bp):
TTTTAT
Found at i:29712 original size:14 final size:13
Alignment explanation
Indices: 29669--29703 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
29659 TTTATTTTTT
*
29669 ATTTTTTTAATTG
1 ATTTTTTTGATTG
29682 ATTTTTTTGATTG
1 ATTTTTTTGATTG
29695 ATTTTTTTG
1 ATTTTTTTG
29704 TTATTATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.17, C:0.00, G:0.11, T:0.71
Consensus pattern (13 bp):
ATTTTTTTGATTG
Found at i:30121 original size:9 final size:8
Alignment explanation
Indices: 30100--30145 Score: 58
Period size: 8 Copynumber: 5.9 Consensus size: 8
30090 CTTTAGTTTA
30100 ATTTTTTC
1 ATTTTTTC
30108 ATTTTTTC
1 ATTTTTTC
*
30116 A-CTTTTC
1 ATTTTTTC
30123 ATTTTTTC
1 ATTTTTTC
**
30131 ATTTCATC
1 ATTTTTTC
30139 ATTTTTT
1 ATTTTTT
30146 TTATGGGAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
7 6 0.19
8 25 0.81
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (8 bp):
ATTTTTTC
Found at i:30123 original size:15 final size:14
Alignment explanation
Indices: 30103--30145 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 14
30093 TAGTTTAATT
30103 TTTTCATTTTTTCA
1 TTTTCATTTTTTCA
30117 CTTTTCATTTTTTCA
1 -TTTTCATTTTTTCA
30132 TTTCATCATTTTTT
1 TTT--TCATTTTTT
30146 TTATGGGAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 3 0.12
15 14 0.54
16 9 0.35
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTCATTTTTTCA
Found at i:30144 original size:23 final size:23
Alignment explanation
Indices: 30100--30144 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
30090 CTTTAGTTTA
**
30100 ATTTTTTCATTTTTTCACTTTTC
1 ATTTTTTCATTTCATCACTTTTC
*
30123 ATTTTTTCATTTCATCATTTTT
1 ATTTTTTCATTTCATCACTTTT
30145 TTTATGGGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.69
Consensus pattern (23 bp):
ATTTTTTCATTTCATCACTTTTC
Found at i:33942 original size:1 final size:1
Alignment explanation
Indices: 33936--33967 Score: 64
Period size: 1 Copynumber: 32.0 Consensus size: 1
33926 CATGATTACG
33936 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
33968 CCCTTTTTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Done.