Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024384.1 Corchorus olitorius cultivar O-4 contig24417, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4157
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31


Found at i:897 original size:30 final size:30

Alignment explanation


    Indices: 839--897  Score: 73
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        829 AATTAACATA

                                   *      
        839 AACAAGCCTCAAACTGCAACAATTAAGTAT
          1 AACAAGCCTCAAACTGCAACAATCAAGTAT

                  *      *    **         
        869 AACAAGTCTCAAATTGCAGTAATCAAGTA
          1 AACAAGCCTCAAACTGCAACAATCAAGTA

        898 CTATCAGTCC


Statistics
Matches: 24,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  30   24  1.00

ACGTcount: A:0.46, C:0.20, G:0.12, T:0.22


Consensus pattern (30 bp):   
AACAAGCCTCAAACTGCAACAATCAAGTAT
Done.