Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024391.1 Corchorus olitorius cultivar O-4 contig24424, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4373
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31


Found at i:3433 original size:21 final size:21

Alignment explanation


    Indices: 3407--3497  Score: 125
    Period size: 21  Copynumber: 4.4  Consensus size: 21

       3397 TGCTAGGAGT

                                  
       3407 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                 
       3428 TCATTGGAGAAGGTTCCAAG-
          1 TCATTGGAGAAGGTTCCAAGC

                                  
       3448 -CATTTGGAGAAGGTTCCAAGC
          1 TCA-TTGGAGAAGGTTCCAAGC

                           *   * 
       3469 TCATTGGAGAAGGTTTCAATC
          1 TCATTGGAGAAGGTTCCAAGC

                    
       3490 TCATTGGA
          1 TCATTGGA

       3498 ATTGCCTAAG


Statistics
Matches: 64,  Mismatches: 2, Indels: 8
        0.86            0.03        0.11

Matches are distributed among these distances:
  19    2  0.03
  20   19  0.30
  21   41  0.64
  22    2  0.03

ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC

Done.