Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024392.1 Corchorus olitorius cultivar O-4 contig24425, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3736
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:415 original size:33 final size:33

Alignment explanation


    Indices: 314--451  Score: 129
    Period size: 33  Copynumber: 4.2  Consensus size: 33

        304 TTGCAAAGAG

                    *       *       *      * 
        314 TGTTTTAGATGTTGTTAGTGATGATACTAAACC
          1 TGTTTTAGGTGTTGTTTGTGATGAAACTAAATC

             **    *                *        
        347 TAATTTAAGTGTTGTTTGTGATGACACTAAATC
          1 TGTTTTAGGTGTTGTTTGTGATGAAACTAAATC

                                              
        380 TGTTTTAGGTGTTGTTTGTGATGAAAC-AAATTC
          1 TGTTTTAGGTGTTGTTTGTGATGAAACTAAA-TC

                        * **                   
        413 TGTTTT-GGATGCTAATTGTGATGAAAAC-AAATC
          1 TGTTTTAGG-TGTTGTTTGTGATG-AAACTAAATC

                  
        446 TGTTTT
          1 TGTTTT

        452 GGTTGATCAT


Statistics
Matches: 88,  Mismatches: 14, Indels: 6
        0.81            0.13        0.06

Matches are distributed among these distances:
  32    5  0.06
  33   76  0.86
  34    7  0.08

ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43


Consensus pattern (33 bp):   
TGTTTTAGGTGTTGTTTGTGATGAAACTAAATC
Done.