Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024402.1 Corchorus olitorius cultivar O-4 contig24435, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8519
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:446 original size:21 final size:21

Alignment explanation


    Indices: 399--447  Score: 53
    Period size: 22  Copynumber: 2.3  Consensus size: 21

        389 AAAAAAGTGT

                   **           *
        399 TAAAAAATTTTATAAGATTAT
          1 TAAAAAAACTTATAAGATTAC

                             *    
        420 TAAAAAAAACTTATAAGGTTAC
          1 T-AAAAAAACTTATAAGATTAC

                  
        442 TAAAAA
          1 TAAAAA

        448 TGCTTAAAAA


Statistics
Matches: 23,  Mismatches: 4, Indels: 2
        0.79            0.14        0.07

Matches are distributed among these distances:
  21    6  0.26
  22   17  0.74

ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33


Consensus pattern (21 bp):   
TAAAAAAACTTATAAGATTAC

Found at i:4827 original size:22 final size:21

Alignment explanation


    Indices: 4788--4839  Score: 68
    Period size: 22  Copynumber: 2.4  Consensus size: 21

       4778 GTAATGGCAC

                                 
       4788 GGTGATGGCCAGTGGTGGCTT
          1 GGTGATGGCCAGTGGTGGCTT

                       *  *       
       4809 GGTGAATGGCCGGTTGTGGCTT
          1 GGTG-ATGGCCAGTGGTGGCTT

                *    
       4831 GGTGGTGGC
          1 GGTGATGGC

       4840 GCGGCACTGG


Statistics
Matches: 27,  Mismatches: 3, Indels: 2
        0.84            0.09        0.06

Matches are distributed among these distances:
  21    8  0.30
  22   19  0.70

ACGTcount: A:0.08, C:0.13, G:0.50, T:0.29


Consensus pattern (21 bp):   
GGTGATGGCCAGTGGTGGCTT
Done.