Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024403.1 Corchorus olitorius cultivar O-4 contig24436, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 990

Length: 1650
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32


Found at i:426 original size:25 final size:24

Alignment explanation


    Indices: 390--436  Score: 69
    Period size: 26  Copynumber: 1.9  Consensus size: 24

        380 TCCTTCTATT

                                    
        390 CATCTATCATC-AAGTTTTTCATC
          1 CATCTATCATCAAAGTTTTTCATC

                                    
        413 CATCTCATCCATCAAAGTTTTTCA
          1 CATCT-AT-CATCAAAGTTTTTCA

        437 AATTTTCAAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  23    5  0.24
  24    2  0.10
  25    4  0.19
  26   10  0.48

ACGTcount: A:0.28, C:0.28, G:0.04, T:0.40


Consensus pattern (24 bp):   
CATCTATCATCAAAGTTTTTCATC

Found at i:862 original size:21 final size:21

Alignment explanation


    Indices: 836--876  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        826 TTTAAACCCT

                                  
        836 ATTGGAGAC-AAGTGGTACTAA
          1 ATTGGA-ACTAAGTGGTACTAA

                  *             
        857 ATTGGATCTAAGTGGTACTA
          1 ATTGGAACTAAGTGGTACTA

        877 GGGTTTATAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20    1  0.06
  21   17  0.94

ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29


Consensus pattern (21 bp):   
ATTGGAACTAAGTGGTACTAA
Done.