Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01024405.1 Corchorus olitorius cultivar O-4 contig24438, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4041
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.36
Found at i:2088 original size:152 final size:152
Alignment explanation
Indices: 1808--2114 Score: 596
Period size: 152 Copynumber: 2.0 Consensus size: 152
1798 TGATGGTGGA
1808 GCGTCTCGGACGCGACCCAGCGCTGGTGTGTTTGTTTTAACGGACCATGACTTTATTTTGGATCC
1 GCGTCTCGGACGCGACCCAGCGCTGGTGTGTTTGTTTTAACGGACCATGACTTTATTTTGGATCC
*
1873 ACATAGTTCGTAGCTCCAGGCCCGACACGATATATTTATTCATCTACCGGTTCGACGTGTGCATG
66 ACATAGTTCGTAGCTCCAGGCCCGACACGATATATTTATTCATCTACCGGTTCGACGTATGCATG
1938 GGAGAGCTAAATTGGGTGTGCT
131 GGAGAGCTAAATTGGGTGTGCT
1960 GCGTCTCGGACGCGACCCAGCGCTGGTGTGTTTGTTTTAACGGACCATGACTTTATTTTGGATCC
1 GCGTCTCGGACGCGACCCAGCGCTGGTGTGTTTGTTTTAACGGACCATGACTTTATTTTGGATCC
2025 ACATAGTTCGTAGCTCCAGGCCCGACACGATATATTTATTCATCTACCGGTTCGACGTATGCATG
66 ACATAGTTCGTAGCTCCAGGCCCGACACGATATATTTATTCATCTACCGGTTCGACGTATGCATG
*
2090 GGAGATCTAAATTGGGTGTGCT
131 GGAGAGCTAAATTGGGTGTGCT
2112 GCG
1 GCG
2115 GCCACCACAC
Statistics
Matches: 153, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
152 153 1.00
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.30
Consensus pattern (152 bp):
GCGTCTCGGACGCGACCCAGCGCTGGTGTGTTTGTTTTAACGGACCATGACTTTATTTTGGATCC
ACATAGTTCGTAGCTCCAGGCCCGACACGATATATTTATTCATCTACCGGTTCGACGTATGCATG
GGAGAGCTAAATTGGGTGTGCT
Done.