Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024412.1 Corchorus olitorius cultivar O-4 contig24445, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18265

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3328--3363
11
3.3
11
100
0
72
19
8
11
61
1.54
6930--6977
19
2.4
19
82
6
51
54
10
10
25
1.66
8023--8102
38
2.1
37
81
2
88
3
38
41
16
1.66
8127--8186
5
12.2
5
80
16
56
0
21
0
78
0.75
8127--8186
23
2.6
22
85
15
86
0
21
0
78
0.75
8127--8186
26
2.2
28
85
11
81
0
21
0
78
0.75
9816--9856
21
2.0
21
85
0
55
31
9
12
46
1.74
12280--12396
57
2.1
57
98
0
225
36
11
15
35
1.84
13166--13315
76
2.0
76
93
2
257
35
11
19
34
1.87
14120--14216
49
2.0
49
91
0
158
40
17
5
37
1.72
17324--17517
22
8.6
22
71
10
124
41
9
15
32
1.80
17370--17517
43
3.4
44
81
2
138
40
10
16
32
1.82
17441--17565
43
2.9
43
83
3
133
39
12
14
34
1.83
17375--17544
65
2.6
63
82
6
196
39
10
16
33
1.83
17361--17544
22
8.5
21
73
7
145
40
9
16
33
1.81
17464--17565
45
2.3
43
81
5
114
41
12
11
34
1.80
17683--17735
22
2.4
21
81
9
61
39
15
15
30
1.87

Tables:   1

The End!