Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024414.1 Corchorus olitorius cultivar O-4 contig24447, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 967

Length: 1613
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42


Found at i:960 original size:24 final size:25

Alignment explanation


    Indices: 927--983  Score: 82
    Period size: 25  Copynumber: 2.4  Consensus size: 25

        917 GTCAGCCTTG

                                 *   
        927 AATTT-TTTAATGT-TTAATTTTTA
          1 AATTTATTTAATGTCTTAATTATTA

                                    *
        950 AATTTATTTAATGTCTTAATTATTC
          1 AATTTATTTAATGTCTTAATTATTA

                     
        975 AATTTATTT
          1 AATTTATTT

        984 TACAATCCAC


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  23    5  0.17
  24    8  0.27
  25   17  0.57

ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61


Consensus pattern (25 bp):   
AATTTATTTAATGTCTTAATTATTA

Found at i:1572 original size:2 final size:2

Alignment explanation


    Indices: 1565--1605  Score: 82
    Period size: 2  Copynumber: 20.5  Consensus size: 2

       1555 TAAAGACTAG

                                                                         
       1565 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1606 GAAATAAT


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   39  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Done.