Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024416.1 Corchorus olitorius cultivar O-4 contig24449, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3086
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36


Found at i:3031 original size:30 final size:30

Alignment explanation


    Indices: 2997--3059  Score: 74
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       2987 TATAAAAAAA

                                           
       2997 ATATTT-ACTCTAATTTTAATAGTAAGGTAT
          1 ATATTTCACTCTAATTTTAA-AGTAAGGTAT

                    * * **                
       3027 ATATTTCATTTTTTTTTTAAAGTAAGGTAT
          1 ATATTTCACTCTAATTTTAAAGTAAGGTAT

               
       3057 ATA
          1 ATA

       3060 GTATTTCGTG


Statistics
Matches: 28,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  30   19  0.68
  31    9  0.32

ACGTcount: A:0.35, C:0.05, G:0.10, T:0.51


Consensus pattern (30 bp):   
ATATTTCACTCTAATTTTAAAGTAAGGTAT
Done.