Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024418.1 Corchorus olitorius cultivar O-4 contig24451, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 882

Length: 1471
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36


Found at i:214 original size:17 final size:17

Alignment explanation


    Indices: 192--225  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        182 GACTACCTCC

                             
        192 TATTGTGCAATCCATTT
          1 TATTGTGCAATCCATTT

                             
        209 TATTGTGCAATCCATTT
          1 TATTGTGCAATCCATTT

        226 CAATATCATG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.24, C:0.18, G:0.12, T:0.47


Consensus pattern (17 bp):   
TATTGTGCAATCCATTT
Done.