Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01024420.1 Corchorus olitorius cultivar O-4 contig24453, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33041
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:4179 original size:1 final size:1
Alignment explanation
Indices: 4173--4199 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
4163 AGACTCGGTC
4173 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
4200 CTGCTGAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:5324 original size:14 final size:14
Alignment explanation
Indices: 5305--5331 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
5295 AATATATCTA
5305 TATTTATCTATACC
1 TATTTATCTATACC
5319 TATTTATCTATAC
1 TATTTATCTATAC
5332 TATATATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.19, G:0.00, T:0.52
Consensus pattern (14 bp):
TATTTATCTATACC
Found at i:5656 original size:21 final size:21
Alignment explanation
Indices: 5632--5751 Score: 102
Period size: 21 Copynumber: 5.6 Consensus size: 21
5622 AATTTTGGAA
* *
5632 GTTATCAAAATTCATTGTGTG
1 GTTATCAAAATTTATAGTGTG
5653 GTTA-CTAAAATTTATAGTGTG
1 GTTATC-AAAATTTATAGTGTG
*
5674 GTTCTCAAAATTTTATAGTGTG
1 GTTATCAAAA-TTTATAGTGTG
* *
5696 GTTACCAAAATTTCATAGGTATG
1 GTTATCAAAATTT-ATA-GTGTG
*
5719 ATGTTA--AAATTTTATAGTGTG
1 --GTTATCAAAATTTATAGTGTG
*
5740 GTTATCATAATT
1 GTTATCAAAATT
5752 CCATGGGATG
Statistics
Matches: 80, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
19 4 0.05
20 1 0.01
21 35 0.44
22 26 0.32
23 10 0.12
25 4 0.05
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.43
Consensus pattern (21 bp):
GTTATCAAAATTTATAGTGTG
Found at i:5799 original size:27 final size:27
Alignment explanation
Indices: 5767--5865 Score: 99
Period size: 27 Copynumber: 4.0 Consensus size: 27
5757 GGATGTTATC
*
5767 AAAATTTCATAAGGAGGTTATTAAAAT
1 AAAATTTCATAAGGAGGTTATCAAAAT
*
5794 AAAATTTCATAAGGATGTTATCAAAAT
1 AAAATTTCATAAGGAGGTTATCAAAAT
*
5821 ----TTTCATATGGAGGTTATC-----
1 AAAATTTCATAAGGAGGTTATCAAAAT
*
5839 AAAATTTCATAAGGAGGTTATCGAAAT
1 AAAATTTCATAAGGAGGTTATCAAAAT
5866 TCATGGCAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
22 17 0.29
23 16 0.28
27 25 0.43
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.34
Consensus pattern (27 bp):
AAAATTTCATAAGGAGGTTATCAAAAT
Found at i:6000 original size:22 final size:21
Alignment explanation
Indices: 5632--6000 Score: 180
Period size: 22 Copynumber: 16.9 Consensus size: 21
5622 AATTTTGGAA
* *
5632 GTTATCAAAA-TTCATTGTGTG
1 GTTATCAAAATTTCATAG-GAG
*
5653 GTTA-CTAAAATTT-ATAGTGTG
1 GTTATC-AAAATTTCATAG-GAG
* * *
5674 GTTCTCAAAATTTTATAGTGTG
1 GTTATCAAAATTTCATAG-GAG
* *
5696 GTTACCAAAATTTCATAGGTAT
1 GTTATCAAAATTTCATAGG-AG
* * * * *
5718 GATGTTAAAATTTTATAGTGTG
1 GTTATCAAAATTTCATAG-GAG
* * * *
5740 GTTATCATAATTCCATGGGAT
1 GTTATCAAAATTTCATAGGAG
5761 GTTATCAAAATTTCATAAGGAG
1 GTTATCAAAATTTCAT-AGGAG
* *
5783 GTTATTAAAATAAAATTTCATAAGGAT
1 GTTA-T----CAAAATTTCAT-AGGAG
5810 GTTATCAAAATTTTCATATGGAG
1 GTTATCAAAA-TTTCATA-GGAG
5833 GTTATCAAAATTTCATAAGGAG
1 GTTATCAAAATTTCAT-AGGAG
*
5855 GTTATCGAAA-TTCAT-GGCA-
1 GTTATCAAAATTTCATAGG-AG
* * *
5874 -ATGTCAAAATTTCACAAGGAG
1 GTTATCAAAATTTCA-TAGGAG
***
5895 GTTA-CTAAAATTTCATACTTTG
1 GTTATC-AAAATTTCATA-GGAG
*
5917 GTTATCAAAATTTCATAGGGCG
1 GTTATCAAAATTTCATA-GGAG
* *
5939 GCTATCGAAATCTT-ATATGGAG
1 GTTATCAAAAT-TTCATA-GGAG
*
5961 GTTATTAAAATTTCATAGGAAG
1 GTTATCAAAATTTCATAGG-AG
*
5983 ATTATCAAAATTTCATAG
1 GTTATCAAAATTTCATAG
6001 TGTGCTTATA
Statistics
Matches: 266, Mismatches: 55, Indels: 53
0.71 0.15 0.14
Matches are distributed among these distances:
18 6 0.02
19 6 0.02
20 3 0.01
21 54 0.20
22 152 0.57
23 25 0.09
26 1 0.00
27 19 0.07
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (21 bp):
GTTATCAAAATTTCATAGGAG
Found at i:6009 original size:22 final size:22
Alignment explanation
Indices: 5794--6026 Score: 73
Period size: 22 Copynumber: 10.7 Consensus size: 22
5784 TTATTAAAAT
5794 AAAATTTCATAAG-GATG-TTATC
1 AAAATTTCAT-AGTGA-GCTTATC
*
5816 AAAATTTTCATA-TGGAGGTTATC
1 AAAA-TTTCATAGT-GAGCTTATC
*
5839 AAAATTTCATAAG-GAGGTTATC
1 AAAATTTCAT-AGTGAGCTTATC
* * *
5861 GAAA-TTC--A-TG-GCAATGTC
1 AAAATTTCATAGTGAGC-TTATC
* *
5879 AAAATTTCACAAG-GAGGTTA-C
1 AAAATTTCA-TAGTGAGCTTATC
* ** *
5900 TAAAATTTCATACTTTGGTTATC
1 -AAAATTTCATAGTGAGCTTATC
* *
5923 AAAATTTCATAGGGCGGC-TATC
1 AAAATTTCATAGTG-AGCTTATC
* * *
5945 GAAATCTT-ATA-TGGAGGTTATT
1 AAAAT-TTCATAGT-GAGCTTATC
*
5967 AAAATTTCATAG-GAAGATTATC
1 AAAATTTCATAGTG-AGCTTATC
* *
5989 AAAATTTCATAGTGTGCTTATA
1 AAAATTTCATAGTGAGCTTATC
*
6011 AAAATTACATAGTGAG
1 AAAATTTCATAGTGAG
6027 ATAGAGTGAG
Statistics
Matches: 156, Mismatches: 30, Indels: 50
0.66 0.13 0.21
Matches are distributed among these distances:
17 1 0.01
18 8 0.05
19 3 0.02
21 9 0.06
22 111 0.71
23 24 0.15
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (22 bp):
AAAATTTCATAGTGAGCTTATC
Found at i:6174 original size:22 final size:22
Alignment explanation
Indices: 6038--6744 Score: 159
Period size: 22 Copynumber: 32.5 Consensus size: 22
6028 TAGAGTGAGC
*
6038 TTATCAAAATTTCA-AGTGTTG
1 TTATCAAAATTTCATAGTGTGG
* **
6059 TTACCAAAATTTCATAGTGTAA
1 TTATCAAAATTTCATAGTGTGG
* * *
6081 TAATCACAATTTCATA--GAGG
1 TTATCAAAATTTCATAGTGTGG
* * * * *
6101 TTAACAAAATTTCATGGGGAGA
1 TTATCAAAATTTCATAGTGTGG
* * *
6123 TTATCGAAATTT--TAGAGGGG
1 TTATCAAAATTTCATAGTGTGG
6143 ATAATATCAAAATTTCATAGTGTGG
1 -T--TATCAAAATTTCATAGTGTGG
* *
6168 TTATCAAAATTTTATAATGTGG
1 TTATCAAAATTTCATAGTGTGG
* * *
6190 ---T----ATTTCAGAGGGAGAGG
1 TTATCAAAATTTCATA--GTGTGG
* *
6207 TTATCAAATTTTCATTGTGTGG
1 TTATCAAAATTTCATAGTGTGG
* * * *
6229 -TAGTTAAAATTTCATAATGAGT
1 TTA-TCAAAATTTCATAGTGTGG
* *
6251 TTATCAAAATTT-ATAGTGAGA
1 TTATCAAAATTTCATAGTGTGG
* *
6272 TTAACAAAATTTGATAGTGTGG
1 TTATCAAAATTTCATAGTGTGG
* * * * *
6294 TTCTCAAAATTTTATAGGGAGA
1 TTATCAAAATTTCATAGTGTGG
* *
6316 TTAACAAAATTTCATAG-GTAAG
1 TTATCAAAATTTCATAGTGT-GG
*** * * * **
6338 TTATTGTAGTTTTATGGTGTAATTAA
1 TTATCAAAATTTCATAGTG----TGG
* *
6364 TTATCAAAATTTCATTG-GGGG
1 TTATCAAAATTTCATAGTGTGG
* **
6385 TTATCAAAATTTAATAGTGTTC
1 TTATCAAAATTTCATAGTGTGG
** *
6407 TTATCAAAATTTTGTAGT-AGG
1 TTATCAAAATTTCATAGTGTGG
* * * * *
6428 TTAACGAAATTTTATAAG-GAGA
1 TTATCAAAATTTCAT-AGTGTGG
* * *
6450 TTATAAAAAATTT-ATCGGGAT-G
1 TTAT-CAAAATTTCATAGTG-TGG
*
6472 TTATCAAAATTTCATAAG-ATGG
1 TTATCAAAATTTCAT-AGTGTGG
6494 TTATCAAAATTTCATGAG-GTGG
1 TTATCAAAATTTCAT-AGTGTGG
* *
6516 TTTTCAAAATTTCA-AATG-GAG
1 TTATCAAAATTTCATAGTGTG-G
* * *
6537 ATTTATCAAAATTTTATAGGGAGG
1 --TTATCAAAATTTCATAGTGTGG
* *
6561 TTTATAAAAATTTCATAGTGAGG
1 -TTATCAAAATTTCATAGTGTGG
* * *
6584 -TATCACAATTTTAT-GATATGG
1 TTATCAAAATTTCATAG-TGTGG
* *
6605 TTATCAAAATTTCATAATGTGA
1 TTATCAAAATTTCATAGTGTGG
* *
6627 TTA-CAAACACTT--TA-T-CGG
1 TTATCAAA-ATTTCATAGTGTGG
* *
6645 TTATCAAAATATCATAATGTGCG
1 TTATCAAAATTTCATAGTGTG-G
* * * * *
6668 CTTAACAACATTTCATTGGGAGG
1 -TTATCAAAATTTCATAGTGTGG
* *
6691 CTATCAAAATTTCAT-GGGTGG
1 TTATCAAAATTTCATAGTGTGG
* *
6712 TT-GCAAAATTTCATTAG-ATGG
1 TTATCAAAATTTCA-TAGTGTGG
*
6733 TTATTAAAATTT
1 TTATCAAAATTT
6745 TTATAGGGAT
Statistics
Matches: 489, Mismatches: 142, Indels: 109
0.66 0.19 0.15
Matches are distributed among these distances:
15 6 0.01
17 3 0.01
18 6 0.01
19 6 0.01
20 35 0.07
21 104 0.21
22 231 0.47
23 54 0.11
24 23 0.05
25 8 0.02
26 12 0.02
27 1 0.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
TTATCAAAATTTCATAGTGTGG
Found at i:6606 original size:89 final size:89
Alignment explanation
Indices: 6434--6623 Score: 217
Period size: 89 Copynumber: 2.1 Consensus size: 89
6424 TAGGTTAACG
* * * * *
6434 AAATTTTATAA-GGAGATTATAAAAAATTTATCGGGATGTTATCAAAATTTCATAAGATGGTTAT
1 AAATTTCATAATGGAGATTATAAAAAATTTATAGGGAGGTTATAAAAATTTCATAAGATGGGTAT
* *
6498 CAAAATTTCATGAGGTGGTTTTCA
66 CAAAATTTCATGAGATGGTTATCA
* *
6522 AAATTTCA-AATGGAGATTTATCAAAATTTTATAGGGAGGTTTATAAAAATTTCAT-AG-TGAGG
1 AAATTTCATAATGGAGA-TTATAAAAAATTTATAGGGAGG-TTATAAAAATTTCATAAGATG-GG
* * *
6584 TATCACAATTTTATGATATGGTTATCA
63 TATCAAAATTTCATGAGATGGTTATCA
6611 AAATTTCATAATG
1 AAATTTCATAATG
6624 TGATTACAAA
Statistics
Matches: 85, Mismatches: 12, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
87 2 0.02
88 14 0.16
89 51 0.60
90 18 0.21
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.38
Consensus pattern (89 bp):
AAATTTCATAATGGAGATTATAAAAAATTTATAGGGAGGTTATAAAAATTTCATAAGATGGGTAT
CAAAATTTCATGAGATGGTTATCA
Found at i:6791 original size:22 final size:22
Alignment explanation
Indices: 6763--6822 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
6753 ATCTGGAGTG
6763 TAACAAAATTTTATAGGGAAGT
1 TAACAAAATTTTATAGGGAAGT
* * *
6785 TAACAAAATTTCATATGGAGGT
1 TAACAAAATTTTATAGGGAAGT
** *
6807 TTTCAAAATTCTATAG
1 TAACAAAATTTTATAG
6823 TATCATCATA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.35
Consensus pattern (22 bp):
TAACAAAATTTTATAGGGAAGT
Found at i:6972 original size:2 final size:2
Alignment explanation
Indices: 6965--6991 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
6955 CTAAAACTAG
6965 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
6992 TATTATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9167 original size:24 final size:26
Alignment explanation
Indices: 9135--9189 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 26
9125 ACAAGTCTAA
9135 TGATGTTTC-TAC-TGATCATGTTGT
1 TGATGTTTCTTACATGATCATGTTGT
*
9159 TGATGTTTCTTTTCATGATCATGTTGT
1 TGATGTTTC-TTACATGATCATGTTGT
9186 TGAT
1 TGAT
9190 TCTTTTAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 9 0.33
26 2 0.07
27 16 0.59
ACGTcount: A:0.16, C:0.11, G:0.20, T:0.53
Consensus pattern (26 bp):
TGATGTTTCTTACATGATCATGTTGT
Found at i:9192 original size:24 final size:25
Alignment explanation
Indices: 9147--9195 Score: 73
Period size: 27 Copynumber: 1.9 Consensus size: 25
9137 ATGTTTCTAC
9147 TGATCATGTTGTTGATGTTTCTTTTCA
1 TGATCATGTTGTTGA--TTTCTTTTCA
9174 TGATCATGTTGTTGA-TTCTTTT
1 TGATCATGTTGTTGATTTCTTTT
9196 AAACATTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 7 0.32
27 15 0.68
ACGTcount: A:0.14, C:0.10, G:0.18, T:0.57
Consensus pattern (25 bp):
TGATCATGTTGTTGATTTCTTTTCA
Found at i:13099 original size:35 final size:34
Alignment explanation
Indices: 13033--13100 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 34
13023 ACAACAACAT
* *
13033 AAAAACCAACAACAAATTTGATGTAAAAAAAAAA
1 AAAAACCAACAACAAATTTAAAGTAAAAAAAAAA
*
13067 AAAAGACCAACAACAAATTTAAAG-AAAGAAAAAA
1 AAAA-ACCAACAACAAATTTAAAGTAAAAAAAAAA
13101 TGTACCTTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 13 0.43
35 17 0.57
ACGTcount: A:0.69, C:0.12, G:0.07, T:0.12
Consensus pattern (34 bp):
AAAAACCAACAACAAATTTAAAGTAAAAAAAAAA
Found at i:16199 original size:34 final size:35
Alignment explanation
Indices: 16146--16216 Score: 101
Period size: 34 Copynumber: 2.1 Consensus size: 35
16136 ACAAATATAC
*
16146 AACAGTTTAATCTTATCCTT-GTAA-ATTTCTTGGA
1 AACAATTTAATCTTATCCTTAGTAATATTT-TTGGA
*
16180 AACAATTTAATCTTGTCCTTAGTAATATTTTTGGA
1 AACAATTTAATCTTATCCTTAGTAATATTTTTGGA
16215 AA
1 AA
16217 AAACAGAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
34 18 0.55
35 11 0.33
36 4 0.12
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (35 bp):
AACAATTTAATCTTATCCTTAGTAATATTTTTGGA
Found at i:21409 original size:23 final size:23
Alignment explanation
Indices: 21377--21433 Score: 96
Period size: 23 Copynumber: 2.5 Consensus size: 23
21367 TGTGATAATA
*
21377 ACGAAAAAACTAATATTGAAATG
1 ACGAAAAAACCAATATTGAAATG
*
21400 ACGAAGAAACCAATATTGAAATG
1 ACGAAAAAACCAATATTGAAATG
21423 ACGAAAAAACC
1 ACGAAAAAACC
21434 CATCTAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.56, C:0.14, G:0.14, T:0.16
Consensus pattern (23 bp):
ACGAAAAAACCAATATTGAAATG
Found at i:23073 original size:3 final size:3
Alignment explanation
Indices: 23065--23098 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
23055 TTTCTGAGCT
23065 TTC TTC TTC -TC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
23099 TATCTTTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:27610 original size:29 final size:31
Alignment explanation
Indices: 27573--27634 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 31
27563 TTTTAGGGAC
*
27573 TTGGCCCTT-GAACTTTAGATTTTGGACAAT
1 TTGGCCCTTCAAACTTTAGATTTTGGACAAT
**
27603 TTGG-CCTTCAAACTTTATTTTTTGGACAAT
1 TTGGCCCTTCAAACTTTAGATTTTGGACAAT
27633 TT
1 TT
27635 AGCACGAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 4 0.14
30 24 0.86
ACGTcount: A:0.23, C:0.16, G:0.16, T:0.45
Consensus pattern (31 bp):
TTGGCCCTTCAAACTTTAGATTTTGGACAAT
Found at i:29302 original size:21 final size:21
Alignment explanation
Indices: 29273--29312 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
29263 TTTGGCGGGA
29273 ATTTACTTTTTTCCTTTTTCC
1 ATTTACTTTTTTCCTTTTTCC
*
29294 ATTTTCTTTTTTCCTTTTT
1 ATTTACTTTTTTCCTTTTT
29313 TATAGCAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.72
Consensus pattern (21 bp):
ATTTACTTTTTTCCTTTTTCC
Found at i:29827 original size:19 final size:20
Alignment explanation
Indices: 29788--29828 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
29778 TTAATTTTTG
*
29788 AAATTAAAAATAAAATTACA
1 AAATTAAAAATAAAATCACA
*
29808 AAATTAAACA-AAAATCACA
1 AAATTAAAAATAAAATCACA
29827 AA
1 AA
29829 CACTCTTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.20
Consensus pattern (20 bp):
AAATTAAAAATAAAATCACA
Found at i:32946 original size:2 final size:2
Alignment explanation
Indices: 32939--32972 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
32929 ATTATTACTT
32939 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32973 GTTTCTCTCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.