genome.fa.s24421.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024421.1 Corchorus olitorius cultivar O-4 contig24454, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55938

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--37	2	18.5	2	100	0	74	48	0	0	51	1.00
2188--2244	29	2.0	29	86	3	80	26	15	14	43	1.85
2388--2452	31	2.1	31	94	0	112	41	10	13	33	1.80
3062--3300	126	1.9	125	86	2	336	35	10	1	52	1.46
3452--3514	31	2.1	31	85	5	85	33	12	12	41	1.81
3452--3524	29	2.4	31	81	4	87	30	15	12	42	1.83
3658--3737	29	2.7	30	82	3	99	40	11	17	31	1.85
4202--4460	103	2.5	104	89	4	389	41	8	8	41	1.66
4591--4653	31	2.1	31	85	5	85	33	12	12	41	1.81
4591--4663	29	2.4	31	81	4	87	30	15	12	42	1.83
4797--4876	29	2.7	30	82	7	83	38	12	18	30	1.88
5882--5920	12	3.2	12	85	0	51	0	33	2	64	1.08
7137--7181	20	2.2	20	100	0	90	24	8	8	57	1.57
11599--11725	21	6.0	21	91	1	159	30	21	33	14	1.94
11599--11725	42	3.0	42	89	0	191	30	21	33	14	1.94
11599--11725	63	2.0	63	89	0	191	30	21	33	14	1.94
22740--22766	14	1.9	14	100	0	54	18	7	14	59	1.58
24660--24700	18	2.3	18	95	0	73	12	24	29	34	1.91
24660--24712	18	2.9	18	85	0	61	11	22	28	37	1.89
25196--25307	59	1.9	59	98	0	215	15	25	32	26	1.95
29658--29772	31	3.7	31	90	1	176	36	25	20	17	1.94
29643--29801	62	2.6	63	84	3	198	33	25	23	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29643--29801	31	5.2	31	81	6	171	33	25	23	16	1.96
30971--31014	3	14.7	3	95	0	70	0	27	0	72	0.85
30966--31016	15	3.2	15	89	10	75	0	23	0	76	0.79
30967--31005	12	3.2	12	88	3	51	0	23	0	76	0.78
37910--37958	22	2.2	22	92	0	80	32	8	20	38	1.82
42856--43340	253	1.9	253	93	0	844	35	17	20	26	1.95
44165--44218	25	2.2	25	86	6	74	40	7	3	48	1.49
44262--44317	26	2.2	26	87	3	78	42	7	3	46	1.48
44542--44634	48	1.9	48	86	0	132	37	23	7	31	1.83
52794--52832	19	2.1	19	100	0	78	43	10	20	25	1.83
52846--52874	14	2.1	14	100	0	58	41	0	20	37	1.53
55441--55604	29	5.6	29	80	5	170	17	15	22	44	1.86
55465--55613	59	2.5	58	86	4	201	16	17	24	41	1.89

Tables:   1

The End!