Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024429.1 Corchorus olitorius cultivar O-4 contig24462, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47826

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9183--10290
54
20.6
54
79
7
1053
32
21
17
29
1.96
10210--10595
160
2.4
161
79
8
392
37
20
16
25
1.93
9340--10610
54
23.6
54
78
10
450
33
21
16
28
1.95
13565--13653
36
2.5
36
94
3
153
39
11
23
25
1.88
14670--14803
62
2.2
62
100
0
268
23
32
26
17
1.97
15431--15472
21
2.0
21
85
0
57
59
7
0
33
1.25
27077--27138
7
9.1
7
79
10
67
4
1
41
51
1.33
27099--27152
22
2.5
22
87
6
74
5
5
31
57
1.45
28828--29243
69
6.0
69
88
3
579
27
25
11
35
1.90
31007--31078
36
2.0
37
97
2
137
44
22
13
19
1.86
32767--32793
2
13.5
2
100
0
54
51
0
0
48
1.00
35850--35877
2
14.0
2
100
0
56
50
0
0
50
1.00
37750--37826
39
2.0
39
87
5
111
45
12
11
29
1.78
41269--41338
25
2.8
25
82
2
88
18
25
31
24
1.98
47181--47216
2
18.0
2
100
0
72
50
0
0
50
1.00

Tables:   1

The End!