Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024430.1 Corchorus olitorius cultivar O-4 contig24463, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22747

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2278--2363
25
3.4
25
95
0
154
23
34
20
20
1.96
3971--4339
181
2.0
184
93
4
629
35
11
35
17
1.86
6494--6532
20
2.0
20
94
0
69
41
33
7
17
1.79
7002--7042
21
2.0
21
95
0
73
9
4
29
56
1.53
9428--9530
22
4.6
22
73
2
62
38
15
12
33
1.85
9500--9554
22
2.4
23
81
3
67
38
18
12
30
1.88
9593--9639
22
2.1
22
92
0
76
40
14
10
34
1.81
9689--9833
22
6.6
23
68
18
85
35
15
8
40
1.78
9730--9833
44
2.4
43
84
12
124
37
13
9
39
1.77
9750--9834
22
3.9
22
76
11
86
38
12
9
38
1.76
9850--10093
22
11.0
23
69
15
113
31
15
10
42
1.81
10145--10204
22
2.7
23
84
5
79
48
16
5
30
1.67
10215--10274
22
2.7
22
80
10
68
35
16
11
36
1.85
10360--10492
22
6.0
22
77
8
137
36
18
10
33
1.85
10341--10488
44
3.3
44
85
5
174
37
17
10
35
1.84
10655--10692
19
2.0
20
85
15
53
63
2
5
28
1.30
11948--12041
45
2.2
45
83
11
117
40
20
3
36
1.68
15233--15307
35
2.1
35
92
4
125
22
16
17
44
1.87
15349--15380
16
2.0
16
93
0
55
53
0
0
46
1.00
15333--15380
19
2.5
19
83
10
62
47
0
0
52
1.00
15639--15720
35
2.5
33
81
11
96
41
24
15
18
1.89
15640--15710
35
2.0
35
89
5
108
38
26
16
18
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18120--18178
16
3.7
16
84
6
75
54
1
38
5
1.33
18120--18165
17
2.9
16
90
6
67
56
2
34
6
1.37

Tables:   1

The End!