Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024432.1 Corchorus olitorius cultivar O-4 contig24465, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79162

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2368--2664
41
7.2
41
89
2
405
37
18
14
29
1.91
11261--11326
29
2.2
30
83
5
89
30
19
9
40
1.83
16370--16409
2
20.0
2
94
0
71
50
0
2
47
1.14
21107--21148
16
2.7
16
85
3
59
38
35
19
7
1.79
21139--21190
16
3.2
16
75
20
63
36
38
17
7
1.78
21136--21219
32
2.6
32
94
5
143
35
36
19
8
1.82
21147--21204
16
3.6
17
76
19
70
36
36
17
10
1.84
21204--21281
16
4.9
16
69
9
61
39
37
14
8
1.77
22533--22557
11
2.3
11
100
0
50
24
8
8
60
1.52
22575--22672
42
2.3
42
82
5
106
26
15
9
48
1.74
32912--32986
33
2.2
33
81
6
89
12
10
14
62
1.54
40481--40511
2
15.5
2
100
0
62
48
0
0
51
1.00
42696--42899
101
2.0
102
87
3
295
41
21
12
25
1.87
43466--43642
89
2.0
90
87
4
261
31
10
2
54
1.49
51291--51327
17
2.2
17
95
0
65
45
2
45
5
1.40
53919--54095
96
1.9
95
89
5
277
38
25
15
20
1.92
60573--60617
10
4.5
10
81
10
56
28
2
15
53
1.54
60670--60776
54
2.0
55
90
5
173
53
10
0
35
1.41
60739--60780
20
2.1
20
86
8
59
57
7
0
35
1.26
61965--61997
16
2.1
16
100
0
66
30
0
30
39
1.57
62904--62960
19
2.8
20
78
10
62
31
22
12
33
1.91
68401--68475
28
2.7
28
87
8
100
32
18
12
37
1.88

Tables:   1

The End!