Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024433.1 Corchorus olitorius cultivar O-4 contig24466, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31258

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2570--2667
27
3.7
27
73
2
81
39
27
14
18
1.89
3435--3535
50
2.0
50
92
0
166
36
10
15
36
1.83
3813--3848
14
2.7
13
91
4
54
13
16
0
69
1.19
3813--3849
13
2.7
14
91
4
58
13
16
0
70
1.17
6939--7084
75
1.9
75
90
2
231
30
19
9
39
1.84
11780--11883
35
2.9
36
84
5
131
41
14
14
29
1.85
12458--12518
31
2.0
31
100
0
122
40
9
13
36
1.77
12954--13045
45
2.0
45
100
0
184
27
17
10
44
1.82
18750--18977
54
4.2
54
84
2
260
26
19
5
47
1.72
18951--19109
22
7.2
22
83
0
174
15
24
3
56
1.55
18958--19109
66
2.3
66
86
0
196
15
24
2
57
1.52
19083--19728
58
11.0
57
76
12
533
24
19
5
50
1.68
19369--19416
22
2.2
22
88
0
69
14
27
6
52
1.66
19060--19700
308
2.1
305
88
3
966
24
19
5
51
1.67
19267--19529
138
1.9
137
86
2
375
22
20
5
52
1.67
19208--19587
195
2.0
193
87
4
550
22
20
5
52
1.66
19454--19547
30
3.2
30
65
8
86
21
17
3
58
1.52
19391--19728
115
3.0
115
87
3
474
25
18
5
51
1.66
19426--19789
57
6.5
53
81
8
214
26
18
5
49
1.69
25404--25517
45
2.5
45
91
1
183
28
21
34
15
1.94
26300--26761
64
7.3
63
84
4
590
22
16
17
42
1.88
26300--26761
191
2.4
190
88
4
687
22
16
17
42
1.88

Tables:   1

The End!