Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024434.1 Corchorus olitorius cultivar O-4 contig24467, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44623

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1226--1267
21
2.0
21
95
0
75
33
26
19
21
1.97
6929--6989
10
6.1
10
75
24
58
37
0
0
62
0.96
6935--6989
16
3.2
16
85
15
67
38
0
0
61
0.96
6929--6988
8
7.4
8
78
17
54
38
0
0
61
0.96
6989--7432
223
2.0
220
87
4
626
32
21
11
34
1.89
8177--8224
17
2.6
20
75
21
59
56
16
8
18
1.65
10018--10132
56
2.1
56
94
0
203
32
29
12
26
1.92
10221--10309
46
2.0
45
90
2
142
34
4
22
38
1.75
10760--10789
11
2.7
11
94
0
51
83
0
13
3
0.77
14740--15063
160
2.0
161
96
2
607
22
17
20
39
1.92
30849--30961
21
5.4
21
94
2
176
26
25
19
28
1.99
33187--33325
29
4.8
29
96
0
251
35
17
14
33
1.90
33187--33397
58
3.4
58
83
12
287
33
17
15
33
1.91
33187--33397
87
2.3
94
88
8
310
33
17
15
33
1.91
33290--33443
40
4.2
37
73
24
139
35
16
16
32
1.91
33338--33397
30
2.0
29
96
3
111
30
16
16
36
1.91
33272--33437
69
2.4
69
91
5
264
33
17
16
33
1.92
33457--33482
8
3.2
8
100
0
52
23
0
11
65
1.25
36072--36141
30
2.3
30
87
4
97
15
12
21
50
1.78
37539--37582
13
3.4
13
79
20
56
20
25
20
34
1.97
37553--37634
41
2.0
41
85
0
110
21
24
15
37
1.93
37645--38021
60
6.4
59
90
4
521
25
21
14
38
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37608--38021
121
3.5
117
86
6
539
25
20
14
38
1.91
39419--39474
3
19.0
3
92
3
96
0
0
30
69
0.89
39409--39491
12
7.1
12
89
5
82
0
1
24
74
0.89
39406--39491
15
6.6
12
82
12
59
0
1
23
75
0.87
43323--43362
15
2.6
16
88
4
55
62
12
10
15
1.54

Tables:   1

The End!