Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002444.1 Corchorus olitorius cultivar O-4 contig02444, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 854

Length: 1424
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42


Found at i:1081 original size:2 final size:2

Alignment explanation


    Indices: 1074--1105  Score: 64
    Period size: 2  Copynumber: 16.0  Consensus size: 2

       1064 CTAATATAAC

                                                           
       1074 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       1106 AGTAAGATTG


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.